Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc20e06
         (365 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    21   4.6  
L01587-1|AAA27734.1|   69|Apis mellifera zinc finger protein pro...    21   6.0  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    20   8.0  

>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 21.0 bits (42), Expect = 4.6
 Identities = 6/18 (33%), Positives = 11/18 (61%)
 Frame = +1

Query: 172 NCHLKGSRLVMHQSQVNY 225
           NC  +G ++  H + V+Y
Sbjct: 450 NCRKRGEKIARHINSVSY 467


>L01587-1|AAA27734.1|   69|Apis mellifera zinc finger protein
           protein.
          Length = 69

 Score = 20.6 bits (41), Expect = 6.0
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = +1

Query: 145 YT*INK*ILNCHLK 186
           Y+ +NK +LN HLK
Sbjct: 24  YSCVNKSMLNSHLK 37


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 20.2 bits (40), Expect = 8.0
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = +1

Query: 313 F*FLFFLMNKTYFI 354
           F FLF ++N TY+I
Sbjct: 409 FPFLFAVLNVTYWI 422


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 75,536
Number of Sequences: 438
Number of extensions: 1281
Number of successful extensions: 8
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  8680350
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)