Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc20e04
         (424 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292374-1|CAL23186.2|  659|Tribolium castaneum gustatory recept...    22   2.1  
AM292345-1|CAL23157.2|  384|Tribolium castaneum gustatory recept...    22   2.1  
U09586-3|AAC47272.1|  470|Tribolium castaneum integrase protein.       21   3.7  
AM292355-1|CAL23167.1|  324|Tribolium castaneum gustatory recept...    21   4.9  
DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.          21   6.5  
AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein ...    21   6.5  
EF222294-1|ABN79654.1|  451|Tribolium castaneum ecdysis triggeri...    20   8.6  
EF222293-1|ABN79653.1|  434|Tribolium castaneum ecdysis triggeri...    20   8.6  

>AM292374-1|CAL23186.2|  659|Tribolium castaneum gustatory receptor
           candidate 53 protein.
          Length = 659

 Score = 22.2 bits (45), Expect = 2.1
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = -3

Query: 311 GVSFLYYVINVYFWIVPQKLSHLAIFSL 228
           GVSF+  VI ++F+    +   L   SL
Sbjct: 532 GVSFVVIVITIFFFTANVQAGELYFMSL 559


>AM292345-1|CAL23157.2|  384|Tribolium castaneum gustatory receptor
           candidate 24 protein.
          Length = 384

 Score = 22.2 bits (45), Expect = 2.1
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = -3

Query: 311 GVSFLYYVINVYFWIVPQKLSHLAIFSL 228
           GVSF+  VI ++F+    +   L   SL
Sbjct: 257 GVSFVVIVITIFFFTANVQAGELYFMSL 284


>U09586-3|AAC47272.1|  470|Tribolium castaneum integrase protein.
          Length = 470

 Score = 21.4 bits (43), Expect = 3.7
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = +1

Query: 13  NYNYP*KISDVFVF*KEYTPENLETERGLKKVQAE 117
           +Y YP +   V +F    TPE L+    LK+ Q++
Sbjct: 40  SYEYPREQPIVAMFEVNNTPEILQLMSDLKQHQSD 74


>AM292355-1|CAL23167.1|  324|Tribolium castaneum gustatory receptor
           candidate 34 protein.
          Length = 324

 Score = 21.0 bits (42), Expect = 4.9
 Identities = 4/12 (33%), Positives = 10/12 (83%)
 Frame = -3

Query: 299 LYYVINVYFWIV 264
           ++  +NV+FW++
Sbjct: 98  IFIFVNVFFWVI 109


>DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.
          Length = 822

 Score = 20.6 bits (41), Expect = 6.5
 Identities = 8/24 (33%), Positives = 13/24 (54%)
 Frame = -2

Query: 372 YXIGSTM*DNHPNLAKHQQTWGIF 301
           Y + +        L+KHQQ +GI+
Sbjct: 14  YDLNNEFYRGRKKLSKHQQIYGIW 37


>AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein
           protein.
          Length = 370

 Score = 20.6 bits (41), Expect = 6.5
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = +1

Query: 367 SVLSPSLKKVPRDQSFLC 420
           S +SP +K   RD+ F C
Sbjct: 120 SSVSPEVKDSSRDRPFTC 137


>EF222294-1|ABN79654.1|  451|Tribolium castaneum ecdysis triggering
           hormone receptorisoform B protein.
          Length = 451

 Score = 20.2 bits (40), Expect = 8.6
 Identities = 11/43 (25%), Positives = 19/43 (44%)
 Frame = -2

Query: 318 QTWGIFPLLCDQCLFLDSPAKTFSSCHILAVLLHDEFFVDKPL 190
           +TW +   +C    F++      S   ILA+     + + KPL
Sbjct: 134 ETWVLGREMCKAVPFVELTVAHASVLTILAISFERYYAICKPL 176


>EF222293-1|ABN79653.1|  434|Tribolium castaneum ecdysis triggering
           hormone receptorisoform A protein.
          Length = 434

 Score = 20.2 bits (40), Expect = 8.6
 Identities = 11/43 (25%), Positives = 19/43 (44%)
 Frame = -2

Query: 318 QTWGIFPLLCDQCLFLDSPAKTFSSCHILAVLLHDEFFVDKPL 190
           +TW +   +C    F++      S   ILA+     + + KPL
Sbjct: 134 ETWVLGREMCKAVPFVELTVAHASVLTILAISFERYYAICKPL 176


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 107,091
Number of Sequences: 336
Number of extensions: 2312
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 51
effective length of database: 105,449
effective search space used:  9384961
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)