Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc20e04
(424 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC19F5.05c |ppp1|SPBC25D12.01c|pescadillo-family BRCT domain p... 138 3e-34
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 30 0.13
SPAC25G10.04c |rec10|rec20|meiotic recombination protein Rec10 |... 25 4.8
SPAC1039.01 |||amino acid permease, unknown 5|Schizosaccharomyce... 25 4.8
SPBC83.12 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||M... 25 6.4
SPBC530.01 |gyp1||GTPase activating protein Gyp1 |Schizosaccharo... 25 6.4
SPAC29A4.20 |||RNA polymerase II elongator complex, histone acet... 25 6.4
SPAC6G9.15c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 25 6.4
SPAC17A5.05c |||conserved fungal protein|Schizosaccharomyces pom... 25 6.4
SPAC4F8.07c |hxk2||hexokinase 2 |Schizosaccharomyces pombe|chr 1... 24 8.5
SPAC2F3.03c |rpa49|rpa51|DNA-directed RNA polymerase I complex |... 24 8.5
>SPBC19F5.05c |ppp1|SPBC25D12.01c|pescadillo-family BRCT domain
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 607
Score = 138 bits (334), Expect = 3e-34
Identities = 64/130 (49%), Positives = 87/130 (66%)
Frame = +3
Query: 3 ALKKLQLSLKDFRRICILKGIYPREPRNRKRAQKGAGGIKTLYHTKDIKFLLHEPIIWKL 182
ALKKLQL+L DFRRICILKG+YPREP+N+K+A KG+ T Y+TKDI++LLHEPI+ K
Sbjct: 22 ALKKLQLTLADFRRICILKGVYPREPKNKKKANKGSTAPVTFYYTKDIQYLLHEPIVQKF 81
Query: 183 RELKVYQQKIRRARAQREYGKMRKFLRDYPEINIDHIVKERYPTFVDALRXXXXXXXXXX 362
RE KV+ +K+ +A + E ++ P ++DHI+KERYPTF DAL+
Sbjct: 82 REYKVFARKLSKALGKGELETAKRLEARKPTYSLDHIIKERYPTFHDALKDIDDALSMLF 141
Query: 363 XXXXXPIIEK 392
P+ +K
Sbjct: 142 LFSTMPVTDK 151
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 30.3 bits (65), Expect = 0.13
Identities = 12/24 (50%), Positives = 17/24 (70%)
Frame = -3
Query: 320 NKRGVSFLYYVINVYFWIVPQKLS 249
NK+G+S+ VI + W+V QKLS
Sbjct: 278 NKKGLSYFKAVIRAFEWLVEQKLS 301
>SPAC25G10.04c |rec10|rec20|meiotic recombination protein Rec10
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 791
Score = 25.0 bits (52), Expect = 4.8
Identities = 11/16 (68%), Positives = 12/16 (75%)
Frame = -3
Query: 119 DSACTFLSPLSVSRFS 72
D AC FLS L +SRFS
Sbjct: 185 DFACRFLSGLFISRFS 200
>SPAC1039.01 |||amino acid permease, unknown 5|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 567
Score = 25.0 bits (52), Expect = 4.8
Identities = 11/34 (32%), Positives = 18/34 (52%)
Frame = -3
Query: 149 FYIFSVIKCFDSACTFLSPLSVSRFSGVYSFQNT 48
F + I+CF+ L +SR +GV ++ NT
Sbjct: 193 FLLAVAIQCFNCVLACLPTRIISRINGVATYLNT 226
>SPBC83.12 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 161
Score = 24.6 bits (51), Expect = 6.4
Identities = 10/33 (30%), Positives = 21/33 (63%)
Frame = -1
Query: 367 NRKHNVRQSSKSRKASTNVGYLSFTM*SMFISG 269
NR H +R S +S + +VG++ ++ + ++SG
Sbjct: 77 NRYHGLRFSRQSSQEYDSVGHILYSPITYYVSG 109
>SPBC530.01 |gyp1||GTPase activating protein Gyp1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 514
Score = 24.6 bits (51), Expect = 6.4
Identities = 9/17 (52%), Positives = 12/17 (70%)
Frame = +3
Query: 129 YHTKDIKFLLHEPIIWK 179
+ TKDI+ LL E +WK
Sbjct: 486 WSTKDIEILLSEAFLWK 502
>SPAC29A4.20 |||RNA polymerase II elongator complex, histone
acetyltransferase subunit |Schizosaccharomyces pombe|chr
1|||Manual
Length = 544
Score = 24.6 bits (51), Expect = 6.4
Identities = 11/40 (27%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Frame = -1
Query: 421 CTRM-IGLLELFSMMGKVXNRKHNVRQSSKSRKASTNVGY 305
CTR+ IG+ ++ + + NR H V+ ++ + + + GY
Sbjct: 237 CTRLEIGVQSVYEDVARDTNRGHTVKAVCETFQLAKDTGY 276
>SPAC6G9.15c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 498
Score = 24.6 bits (51), Expect = 6.4
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = -1
Query: 385 MMGKVXNRKHNVRQSSKSRKASTN 314
+MG + K+ V + KS+KASTN
Sbjct: 156 IMGVTKSSKNLVEDAHKSKKASTN 179
>SPAC17A5.05c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 247
Score = 24.6 bits (51), Expect = 6.4
Identities = 13/30 (43%), Positives = 19/30 (63%), Gaps = 2/30 (6%)
Frame = -2
Query: 309 GIFPL-LCDQCL-FLDSPAKTFSSCHILAV 226
GI+ L +C L L P+K FS+C+ L+V
Sbjct: 159 GIYDLVICSFALHLLTEPSKLFSTCYALSV 188
>SPAC4F8.07c |hxk2||hexokinase 2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 455
Score = 24.2 bits (50), Expect = 8.5
Identities = 9/20 (45%), Positives = 13/20 (65%)
Frame = +3
Query: 273 EINIDHIVKERYPTFVDALR 332
++ +D + E YP FVD LR
Sbjct: 394 DVGVDGSLVEHYPHFVDMLR 413
>SPAC2F3.03c |rpa49|rpa51|DNA-directed RNA polymerase I complex
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 425
Score = 24.2 bits (50), Expect = 8.5
Identities = 14/29 (48%), Positives = 18/29 (62%)
Frame = +3
Query: 213 RRARAQREYGKMRKFLRDYPEINIDHIVK 299
RR+ RE +RK L D PEI ID ++K
Sbjct: 293 RRSVGNRE--TLRKKLADPPEILIDGLIK 319
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,878,609
Number of Sequences: 5004
Number of extensions: 39583
Number of successful extensions: 100
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 99
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 100
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 150383836
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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