Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc20e04
(424 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_05_0803 + 27829438-27829461,27829558-27829643,27829960-278300... 111 3e-25
07_01_0181 + 1274177-1274200,1274335-1276161,1276519-1277448,127... 29 2.0
02_01_0177 + 1214226-1214294,1214707-1214794,1216095-1216308,121... 29 2.0
07_03_1451 - 26623913-26624123,26624504-26624593,26624691-266249... 28 2.7
06_01_1087 + 8901950-8902102,8902960-8903996,8904438-8904586,890... 27 6.2
05_03_0269 + 11333823-11334639,11334714-11334775 27 6.2
03_02_0047 + 5262098-5262360,5263066-5263390,5263769-5263862,526... 27 6.2
02_01_0462 + 3332464-3332470,3333606-3335806 27 6.2
01_05_0103 - 18137176-18137283,18137375-18137440,18137592-181378... 27 6.2
08_02_1210 + 25314569-25314596,25315271-25315455,25315539-253156... 27 8.2
05_01_0267 + 2050854-2051682,2051864-2051921,2052518-2052608 27 8.2
03_05_1007 - 29637911-29638333,29640095-29640282,29640688-296407... 27 8.2
>03_05_0803 +
27829438-27829461,27829558-27829643,27829960-27830088,
27830806-27830925,27831007-27831132,27831349-27831433,
27831538-27831648,27832215-27832308,27832448-27832728,
27832840-27832947,27833163-27833284,27833825-27834035,
27834149-27834376,27834591-27834680
Length = 604
Score = 111 bits (266), Expect = 3e-25
Identities = 52/110 (47%), Positives = 76/110 (69%)
Frame = +3
Query: 3 ALKKLQLSLKDFRRICILKGIYPREPRNRKRAQKGAGGIKTLYHTKDIKFLLHEPIIWKL 182
A+K LQ+SL FR++CILKG++PR+P+ +K G KT YH KDI FL H+P+I K
Sbjct: 25 AVKYLQISLATFRKLCILKGVFPRDPK-----KKVEGNHKTYYHMKDIAFLAHDPLIEKF 79
Query: 183 RELKVYQQKIRRARAQREYGKMRKFLRDYPEINIDHIVKERYPTFVDALR 332
RE+KV+++K+++A A++ + L P +D ++ ERYPTFVDALR
Sbjct: 80 REIKVHRKKVKKAFAKKNKDLADRLLNRPPTYKLDRLILERYPTFVDALR 129
>07_01_0181 +
1274177-1274200,1274335-1276161,1276519-1277448,
1278314-1278367
Length = 944
Score = 28.7 bits (61), Expect = 2.0
Identities = 13/45 (28%), Positives = 22/45 (48%)
Frame = -3
Query: 308 VSFLYYVINVYFWIVPQKLSHLAIFSLCSCTTNFLLINL*FPQFP 174
+ L++VI+ F + P L H+ + C N LL+ Q+P
Sbjct: 297 LEILFHVISAQFDVNPSLLGHMPVNMWKKCVNNMLLVLDILQQYP 341
>02_01_0177 +
1214226-1214294,1214707-1214794,1216095-1216308,
1216413-1216738,1216860-1217013,1217377-1217438,
1218078-1218133,1219456-1221279,1221775-1222698,
1222855-1222866
Length = 1242
Score = 28.7 bits (61), Expect = 2.0
Identities = 13/45 (28%), Positives = 22/45 (48%)
Frame = -3
Query: 308 VSFLYYVINVYFWIVPQKLSHLAIFSLCSCTTNFLLINL*FPQFP 174
+ L++VI+ F + P L H+ + C N LL+ Q+P
Sbjct: 611 LEILFHVISAQFDVNPSLLGHMPVNMWKKCVNNMLLVLDILQQYP 655
>07_03_1451 -
26623913-26624123,26624504-26624593,26624691-26624920,
26625692-26625794,26625908-26626150,26626263-26626352,
26626537-26626808
Length = 412
Score = 28.3 bits (60), Expect = 2.7
Identities = 13/35 (37%), Positives = 22/35 (62%)
Frame = -2
Query: 333 LAKHQQTWGIFPLLCDQCLFLDSPAKTFSSCHILA 229
+A +++T G F L D+C F DS + F++ H L+
Sbjct: 297 IASNERTPGFFSPLSDRCDFSDSCSHGFTTAHGLS 331
>06_01_1087 + 8901950-8902102,8902960-8903996,8904438-8904586,
8905437-8905690,8905785-8908799,8908889-8909001,
8909975-8910164,8910399-8910512,8910591-8910698,
8910941-8911073,8911206-8911408,8911626-8911826
Length = 1889
Score = 27.1 bits (57), Expect = 6.2
Identities = 12/40 (30%), Positives = 19/40 (47%)
Frame = +3
Query: 120 KTLYHTKDIKFLLHEPIIWKLRELKVYQQKIRRARAQREY 239
K L H D+K+ ++E WKL + + R +R Y
Sbjct: 1452 KVLIHDIDVKWRMYEGNDWKLAQKDTISRPCSNGRDKRSY 1491
>05_03_0269 + 11333823-11334639,11334714-11334775
Length = 292
Score = 27.1 bits (57), Expect = 6.2
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = -2
Query: 324 HQQTWGIFPLLCDQCLFLDSPAKTFSSCHIL 232
H + G+F LC C+ L PA S+C +L
Sbjct: 34 HVRHDGVFCRLCSSCVLLYHPAAFCSACLLL 64
>03_02_0047 +
5262098-5262360,5263066-5263390,5263769-5263862,
5263964-5264265
Length = 327
Score = 27.1 bits (57), Expect = 6.2
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = +2
Query: 113 RNQNTLSH*RYKIFTTRANNMETEGTKGLSTKNSS 217
RN+ + YK + T+ N E EG++ S +NSS
Sbjct: 214 RNEKVMKF--YKTYATKLNEDEVEGSESDSVQNSS 246
>02_01_0462 + 3332464-3332470,3333606-3335806
Length = 735
Score = 27.1 bits (57), Expect = 6.2
Identities = 14/44 (31%), Positives = 21/44 (47%)
Frame = -3
Query: 332 SQSINKRGVSFLYYVINVYFWIVPQKLSHLAIFSLCSCTTNFLL 201
S+ N RG+ FL NV + +P + HL + + N LL
Sbjct: 567 SELTNLRGLQFLNMSRNVLYGGIPNDIGHLHVVESLDLSCNRLL 610
>01_05_0103 -
18137176-18137283,18137375-18137440,18137592-18137828,
18137914-18138159,18138483-18138686,18138781-18138852
Length = 310
Score = 27.1 bits (57), Expect = 6.2
Identities = 15/63 (23%), Positives = 33/63 (52%)
Frame = +3
Query: 117 IKTLYHTKDIKFLLHEPIIWKLRELKVYQQKIRRARAQREYGKMRKFLRDYPEINIDHIV 296
+KT H K +K + +P+ KL ++ + Q+I + + +++ R+ + N DH
Sbjct: 245 MKTADHAKKMKNVTKDPVHGKLGKVYIPDQQIAKMSLSNDVKGLKRERREAKK-NKDHSK 303
Query: 297 KER 305
K++
Sbjct: 304 KQK 306
>08_02_1210 +
25314569-25314596,25315271-25315455,25315539-25315648,
25315756-25315909,25316213-25316237,25316566-25316756,
25316837-25316899,25317012-25317075,25318078-25318109
Length = 283
Score = 26.6 bits (56), Expect = 8.2
Identities = 17/54 (31%), Positives = 28/54 (51%)
Frame = +3
Query: 9 KKLQLSLKDFRRICILKGIYPREPRNRKRAQKGAGGIKTLYHTKDIKFLLHEPI 170
K+LQ+S K+ R +LKG+ E R R + GG ++ H + +H P+
Sbjct: 82 KELQISDKEHR--VLLKGVTEEEAVCRIRQSRQTGGTQSSSHHSSV---VHTPV 130
>05_01_0267 + 2050854-2051682,2051864-2051921,2052518-2052608
Length = 325
Score = 26.6 bits (56), Expect = 8.2
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = -2
Query: 309 GIFPLLCDQCLFLDSPAKTFSSCHIL 232
G+F LC C+ L PA S+C +L
Sbjct: 40 GVFCRLCSSCVLLYHPAAFCSACLLL 65
>03_05_1007 -
29637911-29638333,29640095-29640282,29640688-29640773,
29641108-29641173,29641289-29641331,29641398-29642328
Length = 578
Score = 26.6 bits (56), Expect = 8.2
Identities = 10/17 (58%), Positives = 13/17 (76%)
Frame = -2
Query: 336 NLAKHQQTWGIFPLLCD 286
N+A+H +TW FPLL D
Sbjct: 285 NIARHPETWLDFPLLPD 301
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,227,192
Number of Sequences: 37544
Number of extensions: 221361
Number of successful extensions: 506
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 501
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 505
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 778540620
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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