Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc20e03
(675 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_1085 + 33989863-33991179 33 0.28
05_07_0278 + 28911722-28911934,28912154-28913055,28913142-289135... 31 0.64
06_01_1164 + 9921555-9922661 29 4.5
05_01_0104 - 688053-688233,688310-688581,689544-689885 29 4.5
04_04_0927 + 29467121-29467168,29467518-29467604,29468180-294682... 29 4.5
11_06_0711 - 26508228-26508488,26508970-26509084,26509179-265094... 28 5.9
05_01_0351 + 2750253-2751042,2751951-2751958,2752122-2752149,275... 28 5.9
04_04_1098 + 30876785-30876835,30876846-30877171,30877396-308774... 28 5.9
04_04_1107 - 30954647-30954769,30955052-30955141,30955309-309556... 28 7.8
>02_05_1085 + 33989863-33991179
Length = 438
Score = 32.7 bits (71), Expect = 0.28
Identities = 31/120 (25%), Positives = 49/120 (40%), Gaps = 13/120 (10%)
Frame = +2
Query: 83 RSPLNIMELKY-WWWMMXXXXXXXXXXXXXDGEV-WEENDHEVLIRSARGAK-------- 232
RSP I+ LK+ WWWMM DG + + E DH + + R A+
Sbjct: 208 RSP-RIVSLKHHWWWMMNTVWDGLDETRDFDGHILFIEEDHYIFPNAYRNAQLLVDLKPS 266
Query: 233 NREACRYVRGAWSECDSKTNIRSRKLTLKKGD---PANCEVVKTIQKKCKRTCRYEKSSW 403
C + A S+ +K + K G+ N V + I K K+ C +++ +W
Sbjct: 267 KCPQCYAINLAPSDVKAKGEGWESLVAEKMGNIGYAFNRTVWRKIHAKAKQFCTFDEYNW 326
>05_07_0278 +
28911722-28911934,28912154-28913055,28913142-28913581,
28913628-28913955,28914101-28914743
Length = 841
Score = 31.5 bits (68), Expect = 0.64
Identities = 26/90 (28%), Positives = 40/90 (44%), Gaps = 1/90 (1%)
Frame = +2
Query: 290 NIRSRKLTLKKGDPANCEVVKTIQKKCKRTCRYEKSSWSECSINGEMSR-TDKLKSNSDS 466
N+ R + L K A E + T+Q R Y+ + INGE+ R ++ S S
Sbjct: 571 NVDRRYVDLDKSWFARKEELTTLQLGTWRDHGYDPRAHHVELINGELLRGIGACRNMSTS 630
Query: 467 TCDQSRRKTRKCNKNKQVKLAKDKGRRNRQ 556
TC + + + +K A D+G R RQ
Sbjct: 631 TCRDATFSAKCPGDREALKAAGDQGIRGRQ 660
>06_01_1164 + 9921555-9922661
Length = 368
Score = 28.7 bits (61), Expect = 4.5
Identities = 15/53 (28%), Positives = 26/53 (49%)
Frame = +3
Query: 339 VKLLKPSRKSARELAAMKSHLGANAASMGRCPGPIS*SPTAIRLATKVGAKLG 497
+++ P R+ R + ++ H+ A AAS G G +RL +V A+ G
Sbjct: 279 LRVAGPVRRPLRRVRQLREHVAAAAASRGGAGGRAGAYRRGVRLGRRVVARSG 331
>05_01_0104 - 688053-688233,688310-688581,689544-689885
Length = 264
Score = 28.7 bits (61), Expect = 4.5
Identities = 13/26 (50%), Positives = 17/26 (65%)
Frame = +2
Query: 476 QSRRKTRKCNKNKQVKLAKDKGRRNR 553
Q R K+RK +KNKQ + K KGR +
Sbjct: 164 QRRSKSRKKDKNKQKQKQKQKGRSKK 189
>04_04_0927 +
29467121-29467168,29467518-29467604,29468180-29468269,
29468547-29468741,29469056-29471080,29471208-29471354,
29471520-29471923,29472015-29472144
Length = 1041
Score = 28.7 bits (61), Expect = 4.5
Identities = 15/32 (46%), Positives = 18/32 (56%)
Frame = -3
Query: 244 CLSIFCASCASNENFMVILLPHLAICGNYRYR 149
C S+FC+SC SN+ M L P N RYR
Sbjct: 635 CGSMFCSSCTSNKITMAALAPDT----NRRYR 662
>11_06_0711 -
26508228-26508488,26508970-26509084,26509179-26509451,
26509629-26510197,26510489-26510597,26511002-26511544,
26511645-26511763,26511893-26512120,26512199-26512315,
26512410-26512506,26513169-26513569
Length = 943
Score = 28.3 bits (60), Expect = 5.9
Identities = 16/61 (26%), Positives = 34/61 (55%)
Frame = +2
Query: 278 DSKTNIRSRKLTLKKGDPANCEVVKTIQKKCKRTCRYEKSSWSECSINGEMSRTDKLKSN 457
D + ++R R+L + A E ++T++ C + + + S CS+ G+M+R + + SN
Sbjct: 249 DERNSLR-RQLWIWIHPSALSEGLETLRAACHQQMQESGDTISCCSLEGKMARLEVMGSN 307
Query: 458 S 460
+
Sbjct: 308 A 308
>05_01_0351 +
2750253-2751042,2751951-2751958,2752122-2752149,
2754692-2754775,2755780-2757548
Length = 892
Score = 28.3 bits (60), Expect = 5.9
Identities = 12/24 (50%), Positives = 13/24 (54%)
Frame = -2
Query: 200 HGHSPPTPRHLRQLPLPIRGPVLP 129
H H P PRH LPLP+ P P
Sbjct: 747 HQHQPYQPRHTDALPLPLPLPPPP 770
>04_04_1098 +
30876785-30876835,30876846-30877171,30877396-30877418,
30877687-30879392
Length = 701
Score = 28.3 bits (60), Expect = 5.9
Identities = 14/49 (28%), Positives = 27/49 (55%)
Frame = +2
Query: 350 KTIQKKCKRTCRYEKSSWSECSINGEMSRTDKLKSNSDSTCDQSRRKTR 496
KT++ + + +K S+ +G+ SR KL +SDS D +++K +
Sbjct: 214 KTLKDDRRHAKKGKKDKGSDAKSHGKSSRKIKLGHDSDSDHDDNKKKKK 262
>04_04_1107 -
30954647-30954769,30955052-30955141,30955309-30955617,
30955732-30955842,30955945-30956379,30956452-30956610,
30957044-30957994,30959016-30959483
Length = 881
Score = 27.9 bits (59), Expect = 7.8
Identities = 11/17 (64%), Positives = 12/17 (70%)
Frame = -2
Query: 188 PPTPRHLRQLPLPIRGP 138
PP PR R LP+P RGP
Sbjct: 50 PPPPRPRRALPIPGRGP 66
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,885,274
Number of Sequences: 37544
Number of extensions: 364391
Number of successful extensions: 1150
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1149
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1714968940
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -