Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc20e02
         (652 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase Abc...    29   0.58 
SPBC1271.01c |pof13||F-box protein Pof13|Schizosaccharomyces pom...    29   0.77 
SPBC25H2.10c |||tRNA acetyltransferase |Schizosaccharomyces pomb...    26   5.4  
SPCC895.09c |ucp12||ATP-dependent RNA helicase Ucp1 |Schizosacch...    26   5.4  
SPBC839.08c |its8||pig-N |Schizosaccharomyces pombe|chr 2|||Manual     25   7.2  
SPAC6G10.08 |idp1||isocitrate dehydrogenase Idp1|Schizosaccharom...    25   9.5  
SPBC902.04 |||RNA-binding protein|Schizosaccharomyces pombe|chr ...    25   9.5  

>SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase
            Abc2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1463

 Score = 29.1 bits (62), Expect = 0.58
 Identities = 14/30 (46%), Positives = 18/30 (60%)
 Frame = -2

Query: 546  FFFRNIKFAKVFINGIVFYCVDKFAILFVP 457
            FFFRN+ F  VF+  ++ Y    F IL VP
Sbjct: 1022 FFFRNL-FQIVFVLAVICYSSPMFMILIVP 1050


>SPBC1271.01c |pof13||F-box protein Pof13|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 396

 Score = 28.7 bits (61), Expect = 0.77
 Identities = 10/21 (47%), Positives = 18/21 (85%)
 Frame = -3

Query: 140 PVLANSNLYSLSSDMFAIVLN 78
           PVL NSNL+ L+ D++++++N
Sbjct: 37  PVLKNSNLFLLNRDIWSLIIN 57


>SPBC25H2.10c |||tRNA acetyltransferase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 287

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = -2

Query: 240 IIRICVSFNLLGVNLVQNRATAYTFNQVIVRKQP 139
           +I + V  N++G+++VQN      FN   V KQP
Sbjct: 223 LILVQVIKNIIGISIVQNFEELRRFNLNEVYKQP 256


>SPCC895.09c |ucp12||ATP-dependent RNA helicase Ucp1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1327

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 11/25 (44%), Positives = 13/25 (52%)
 Frame = +1

Query: 373 YYFGKAGHLRCSGCHIVFKYKSVDD 447
           YYFG AGHL   G     K   ++D
Sbjct: 745 YYFGNAGHLHIHGRTFPIKDYYIED 769


>SPBC839.08c |its8||pig-N |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 935

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = -2

Query: 501 IVFYCVDKFAILFVPALGVVYAFIFKN 421
           I  +C+  F ILF+ AL    A + KN
Sbjct: 899 ISHFCISNFLILFITALEHASAILCKN 925


>SPAC6G10.08 |idp1||isocitrate dehydrogenase
           Idp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 418

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 11/39 (28%), Positives = 21/39 (53%)
 Frame = +1

Query: 49  NFLILSTDGRFRTMANMSLDNEYKFELAKTGLFSHNNLI 165
           N ++   DGRF+       +++YK +  + GL+  + LI
Sbjct: 223 NTILKKYDGRFKDTFQEVYESDYKQKFEELGLWYQHRLI 261


>SPBC902.04 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 589

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 10/45 (22%), Positives = 27/45 (60%)
 Frame = +1

Query: 430 YKSVDDAQRRHKQNCKFVNAIEDYSVNEHFSKLDVAEKEILAADL 564
           +K +++ QR+H++  K +NA +      +  K ++A++++   +L
Sbjct: 357 HKLIEERQRQHEERLKRINANKKALEELNQKKRELAQQQLKEQEL 401


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,668,430
Number of Sequences: 5004
Number of extensions: 53038
Number of successful extensions: 149
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 144
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 149
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)