Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc20e02
         (652 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U23484-8|AAC46765.1| 1200|Caenorhabditis elegans Masculinisation...    28   5.0  
AF286899-1|AAG01332.1| 1200|Caenorhabditis elegans sex determini...    28   5.0  
Z99288-9|CAB16551.2|  335|Caenorhabditis elegans Hypothetical pr...    28   6.6  
Z81515-4|CAB04196.1|  739|Caenorhabditis elegans Hypothetical pr...    27   8.7  
Z54342-4|CAA91150.1|  447|Caenorhabditis elegans Hypothetical pr...    27   8.7  
EF378622-1|ABN54457.1| 1492|Caenorhabditis elegans enhancer of g...    27   8.7  
AL117201-3|CAL64007.1| 1512|Caenorhabditis elegans Hypothetical ...    27   8.7  

>U23484-8|AAC46765.1| 1200|Caenorhabditis elegans Masculinisation of
           germline protein5 protein.
          Length = 1200

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 18/63 (28%), Positives = 31/63 (49%), Gaps = 3/63 (4%)
 Frame = +1

Query: 427 KYKSVDDAQRRHKQNCKFVNAIEDYSVNEHFSKLDVAEKEIL---AADLSPPQLSVKPSA 597
           + ++V D  +R +     VN IE+  ++    ++D    E L     DL+P  + V+P  
Sbjct: 273 RVQTVADVLKRGENVKVKVNKIENGKISLSMKEVDQNSGEDLNPRETDLNPDAIGVRPRT 332

Query: 598 PPA 606
           PPA
Sbjct: 333 PPA 335


>AF286899-1|AAG01332.1| 1200|Caenorhabditis elegans sex determining
           protein MOG-5 protein.
          Length = 1200

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 18/63 (28%), Positives = 31/63 (49%), Gaps = 3/63 (4%)
 Frame = +1

Query: 427 KYKSVDDAQRRHKQNCKFVNAIEDYSVNEHFSKLDVAEKEIL---AADLSPPQLSVKPSA 597
           + ++V D  +R +     VN IE+  ++    ++D    E L     DL+P  + V+P  
Sbjct: 273 RVQTVADVLKRGENVKVKVNKIENGKISLSMKEVDQNSGEDLNPRETDLNPDAIGVRPRT 332

Query: 598 PPA 606
           PPA
Sbjct: 333 PPA 335


>Z99288-9|CAB16551.2|  335|Caenorhabditis elegans Hypothetical
           protein ZK262.10 protein.
          Length = 335

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = -1

Query: 178 SLYI*SGYCEKTAPFWPIQIC 116
           S Y+  GY EKT+P+ P  +C
Sbjct: 73  SYYVVDGYFEKTSPYAPFVLC 93


>Z81515-4|CAB04196.1|  739|Caenorhabditis elegans Hypothetical
           protein F26H11.4 protein.
          Length = 739

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 17/61 (27%), Positives = 27/61 (44%)
 Frame = +1

Query: 439 VDDAQRRHKQNCKFVNAIEDYSVNEHFSKLDVAEKEILAADLSPPQLSVKPSAPPAEPLT 618
           V++A R+ K+     N+ E+   N    K   A +  L     PP  +  P  PP  PL+
Sbjct: 136 VEEANRKKKEGKDPKNS-EEAKKNSKKGKNGTARRSALKGVTIPPVAASLPCPPPPPPLS 194

Query: 619 Q 621
           +
Sbjct: 195 E 195


>Z54342-4|CAA91150.1|  447|Caenorhabditis elegans Hypothetical
           protein C08H9.7 protein.
          Length = 447

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 11/41 (26%), Positives = 20/41 (48%)
 Frame = +1

Query: 142 LFSHNNLIKCIGCRTILDKINAKQIKRHTYSDYCISSTNAL 264
           +FS   ++ C  C+T+   INA  +   T S + + S   +
Sbjct: 50  VFSKLIILACCKCQTVSTSINALMLNNSTTSQHALKSNETI 90


>EF378622-1|ABN54457.1| 1492|Caenorhabditis elegans enhancer of glp-1
            protein.
          Length = 1492

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 14/37 (37%), Positives = 23/37 (62%), Gaps = 2/37 (5%)
 Frame = +1

Query: 529  DVAEKEILAADLSPPQLSVKPSAPPA--EPLTQHVSE 633
            ++++  I AA L+PP  SVKP  P A  +P+ Q  ++
Sbjct: 1370 EMSDFRIAAATLNPPPESVKPVKPAAAVQPMPQMTAQ 1406


>AL117201-3|CAL64007.1| 1512|Caenorhabditis elegans Hypothetical
            protein Y53H1C.2a protein.
          Length = 1512

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 14/37 (37%), Positives = 23/37 (62%), Gaps = 2/37 (5%)
 Frame = +1

Query: 529  DVAEKEILAADLSPPQLSVKPSAPPA--EPLTQHVSE 633
            ++++  I AA L+PP  SVKP  P A  +P+ Q  ++
Sbjct: 1390 EMSDFRIAAATLNPPPESVKPVKPAAAVQPMPQMTAQ 1426


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,935,890
Number of Sequences: 27780
Number of extensions: 310731
Number of successful extensions: 843
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 820
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 843
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1444744186
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)