Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc20d23
         (616 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_03_0145 - 15715181-15715834,15716049-15716271,15717318-15718777     28   5.1  
02_01_0137 + 988442-988641,989088-989281,989369-989488,989594-98...    28   5.1  
01_05_0011 + 17133501-17133738,17135335-17135607,17145224-171453...    28   5.1  
07_03_1382 - 26170563-26170631,26171151-26171843                       28   6.8  

>02_03_0145 - 15715181-15715834,15716049-15716271,15717318-15718777
          Length = 778

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = +2

Query: 548 HALLNNGTCRAHPCASSCLPSGA 616
           H LL     RAHP  ++C P+ A
Sbjct: 75  HGLLRRACVRAHPAVAACAPAAA 97


>02_01_0137 + 988442-988641,989088-989281,989369-989488,989594-989673,
            990244-990510,990840-992458,992571-993327,993560-995506
          Length = 1727

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 21/63 (33%), Positives = 29/63 (46%)
 Frame = +2

Query: 422  LKLKRVINMFLNDEIENDKIYKLVETVDSSNKLSRRQVDFLIHALLNNGTCRAHPCASSC 601
            L L R +N+ +N E+      KL E   S N++       LI   ++N     HPC  SC
Sbjct: 1459 LSLLRRLNIEMNPELFAAWALKLQEQEQSGNQVGLFPPS-LIELEISNLEGSIHPCFFSC 1517

Query: 602  LPS 610
            L S
Sbjct: 1518 LHS 1520


>01_05_0011 +
           17133501-17133738,17135335-17135607,17145224-17145348,
           17145463-17145612,17145653-17145696,17145822-17146174,
           17146280-17146602,17147010-17147105
          Length = 533

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 18/56 (32%), Positives = 27/56 (48%)
 Frame = -2

Query: 315 KKFFIKLDILTSTYYQSIELVFLFKIASSACSISNFFRTLLAL*LGMSSTLDSVFL 148
           KK  + L +L    + ++ L+F F +   A SIS FF   ++L L     L  V L
Sbjct: 99  KKSNLFLQVLIDFIHFALALIFNFGLEGEASSISFFFNLYMSLVLIFPKRLAGVIL 154


>07_03_1382 - 26170563-26170631,26171151-26171843
          Length = 253

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 12/23 (52%), Positives = 15/23 (65%), Gaps = 3/23 (13%)
 Frame = -2

Query: 585 GCALHVPLFNN---ACIKKSTCR 526
           GCALH+ +F N    CI +S CR
Sbjct: 91  GCALHIRVFQNNRLCCICRSPCR 113


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,956,891
Number of Sequences: 37544
Number of extensions: 235236
Number of successful extensions: 541
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 536
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 541
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1478421500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)