Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc20d23
         (616 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL033514-19|CAA22104.1|  696|Caenorhabditis elegans Hypothetical...    29   3.5  
AC006610-3|AAK85449.1|  264|Caenorhabditis elegans Hypothetical ...    28   4.6  
U00043-4|AAN65291.1| 1076|Caenorhabditis elegans Hypothetical pr...    28   6.1  
Z49867-1|CAA90027.1|  312|Caenorhabditis elegans Hypothetical pr...    27   8.1  
Z30423-4|CAA83013.2| 1234|Caenorhabditis elegans Hypothetical pr...    27   8.1  
Z19158-1|CAA79574.1|  788|Caenorhabditis elegans Hypothetical pr...    27   8.1  
U29536-2|AAA68790.1|  759|Caenorhabditis elegans Brf (transcript...    27   8.1  

>AL033514-19|CAA22104.1|  696|Caenorhabditis elegans Hypothetical
           protein Y75B8A.19 protein.
          Length = 696

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 11/18 (61%), Positives = 15/18 (83%)
 Frame = +2

Query: 437 VINMFLNDEIENDKIYKL 490
           V+ +FLNDE+ NDK+Y L
Sbjct: 206 VVEIFLNDELLNDKLYIL 223


>AC006610-3|AAK85449.1|  264|Caenorhabditis elegans Hypothetical
           protein C30F12.3 protein.
          Length = 264

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = +2

Query: 449 FLNDEIENDKIYKLVETVDSSNKLSRRQVDFLIHAL 556
           F  D+  N+KIYK V TV     L+R ++     AL
Sbjct: 207 FFRDKRNNEKIYKEVVTVKKIQLLTRMRISLSAEAL 242


>U00043-4|AAN65291.1| 1076|Caenorhabditis elegans Hypothetical
           protein T26A5.5a protein.
          Length = 1076

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = +2

Query: 149 KNTESNVEDIPSHKAKSVRKKLEIEQALDAIL 244
           +N++S  + I   K K  R+++E+E  LDA L
Sbjct: 681 RNSKSKKDKISKEKKKKERERIELESQLDAEL 712


>Z49867-1|CAA90027.1|  312|Caenorhabditis elegans Hypothetical
           protein C33D3.3 protein.
          Length = 312

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 10/15 (66%), Positives = 10/15 (66%)
 Frame = -3

Query: 491 LVCRFCHFQFHRLKT 447
           LVCR CH  FH  KT
Sbjct: 162 LVCRNCHLYFHHYKT 176


>Z30423-4|CAA83013.2| 1234|Caenorhabditis elegans Hypothetical
           protein T20G5.5 protein.
          Length = 1234

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 16/53 (30%), Positives = 27/53 (50%)
 Frame = +2

Query: 410 KDFSLKLKRVINMFLNDEIENDKIYKLVETVDSSNKLSRRQVDFLIHALLNNG 568
           +D + +  RV N  +  E+ +  +   V T  + + LSR Q+  +   LLNNG
Sbjct: 437 RDITTEHTRVQNCMIGAEMIDWLLTLFVSTSTTCSSLSRIQMSAIWQVLLNNG 489


>Z19158-1|CAA79574.1|  788|Caenorhabditis elegans Hypothetical
           protein T23G5.1 protein.
          Length = 788

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 18/46 (39%), Positives = 22/46 (47%)
 Frame = +2

Query: 464 IENDKIYKLVETVDSSNKLSRRQVDFLIHALLNNGTCRAHPCASSC 601
           I  D I   +ET    N +S R +      L N+GTCR  P  SSC
Sbjct: 184 IHGDDITSAIETY---NLMSERYMTHASPTLFNSGTCR--PQMSSC 224


>U29536-2|AAA68790.1|  759|Caenorhabditis elegans Brf (transcription
           factor) homologprotein 1 protein.
          Length = 759

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
 Frame = +2

Query: 467 ENDKIYKLVETVDSSNKLSRRQVDFLIHALLNN--GTCRAHPCASSCL 604
           ENDK+  L ETV  S+ L +   + + + ++N         PC S+ L
Sbjct: 350 ENDKMQTLTETVVESSGLEKGADEMVRNEIINTVFNAAEEDPCTSNSL 397


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,778,146
Number of Sequences: 27780
Number of extensions: 236545
Number of successful extensions: 648
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 632
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 648
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1332243108
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)