Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc20d22
(334 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_1209 + 34948899-34948938,34949086-34949222,34949854-349499... 97 4e-21
11_01_0686 - 5635207-5635323,5635483-5635644,5635727-5635822,563... 80 5e-16
11_01_0688 - 5667539-5667655,5667792-5667953,5668084-5668179,566... 76 8e-15
03_01_0633 - 4649267-4649383,4649480-4649641,4649735-4649895,465... 76 8e-15
11_01_0689 - 5678227-5678343,5678475-5678636,5678751-5678846,567... 75 1e-14
07_03_1306 - 25643469-25643609,25644008-25644169,25644496-256446... 71 2e-13
02_05_0070 - 25584690-25584806,25585151-25585312,25585396-255854... 66 6e-12
03_01_0636 - 4664472-4664588,4664695-4664856,4664984-4665061,466... 62 1e-10
10_01_0343 - 3773274-3773390,3773476-3773637,3773758-3773853,377... 56 9e-09
09_02_0499 - 9917891-9918148,9918240-9918494,9918769-9918940,991... 28 2.1
12_01_0505 - 4005211-4005234,4005235-4005432,4005522-4006006,400... 27 4.9
06_01_1133 + 9364842-9364850,9364929-9365048,9365157-9365476,936... 27 4.9
03_03_0199 - 15363680-15363739,15363879-15364070,15364154-153646... 27 4.9
06_03_1457 - 30287185-30287287,30287691-30287759,30288212-302883... 26 8.5
05_06_0214 - 26425100-26425922,26426008-26426058,26426183-264262... 26 8.5
01_05_0659 - 24061318-24061575,24061664-24061918,24062001-240621... 26 8.5
01_05_0658 - 24043655-24043945,24044003-24044257,24044359-240445... 26 8.5
>02_05_1209 +
34948899-34948938,34949086-34949222,34949854-34949900,
34949990-34950315,34950640-34950722,34950801-34950876,
34951499-34951656,34951979-34952140,34952235-34952351
Length = 381
Score = 96.7 bits (230), Expect = 4e-21
Identities = 41/68 (60%), Positives = 55/68 (80%)
Frame = +2
Query: 2 PFQLVTGRTWKGTAFGGYKSRESVPKLVDEYLEKKLPLDEFVTHNVPLKEINEAFHLMHA 181
PFQLVTGR WKGTAFGG+KSR VP LV++YL K++ +DE+VTH++ L +IN+AF L+H
Sbjct: 310 PFQLVTGRVWKGTAFGGFKSRSQVPWLVEKYLNKEIKVDEYVTHSMNLTDINKAFDLLHE 369
Query: 182 GKSIRAVV 205
G +R V+
Sbjct: 370 GGCLRCVL 377
>11_01_0686 -
5635207-5635323,5635483-5635644,5635727-5635822,
5635903-5635964,5636046-5636121,5636201-5636283,
5636369-5636694,5637524-5637570,5637668-5637804,
5638064-5638097
Length = 379
Score = 79.8 bits (188), Expect = 5e-16
Identities = 33/70 (47%), Positives = 48/70 (68%)
Frame = +2
Query: 2 PFQLVTGRTWKGTAFGGYKSRESVPKLVDEYLEKKLPLDEFVTHNVPLKEINEAFHLMHA 181
P + RT KGT FG YK R +P +V+ Y++K+L +++F+TH+VP EIN AF LMH
Sbjct: 308 PMNFLNERTLKGTFFGNYKPRTDLPNVVELYMKKELEVEKFITHSVPFSEINTAFDLMHK 367
Query: 182 GKSIRAVVDM 211
G+ IR ++ M
Sbjct: 368 GEGIRCIIRM 377
>11_01_0688 -
5667539-5667655,5667792-5667953,5668084-5668179,
5668278-5668339,5668434-5668509,5668612-5668694,
5668807-5669132,5669741-5669787,5669900-5670036,
5670135-5670168
Length = 379
Score = 75.8 bits (178), Expect = 8e-15
Identities = 33/70 (47%), Positives = 48/70 (68%)
Frame = +2
Query: 2 PFQLVTGRTWKGTAFGGYKSRESVPKLVDEYLEKKLPLDEFVTHNVPLKEINEAFHLMHA 181
P + +T KGT FG YK R +P +V+ Y++K+L L++F+TH+VP EIN AF LM
Sbjct: 308 PMNFLNEKTLKGTFFGNYKPRTDLPNVVELYMKKELELEKFITHSVPFSEINTAFDLMLK 367
Query: 182 GKSIRAVVDM 211
G+S+R V+ M
Sbjct: 368 GESLRCVMRM 377
>03_01_0633 -
4649267-4649383,4649480-4649641,4649735-4649895,
4650056-4650080,4650155-4650237,4650332-4650704
Length = 306
Score = 75.8 bits (178), Expect = 8e-15
Identities = 32/68 (47%), Positives = 48/68 (70%)
Frame = +2
Query: 8 QLVTGRTWKGTAFGGYKSRESVPKLVDEYLEKKLPLDEFVTHNVPLKEINEAFHLMHAGK 187
+++ G+ G+ FGG K ++ +P L D+YL K+L LD+F+TH VPLK+IN AF L+ GK
Sbjct: 237 EILNGKCVMGSLFGGVKPKQDIPILADKYLNKELELDKFITHEVPLKDINTAFDLLLQGK 296
Query: 188 SIRAVVDM 211
S+R + M
Sbjct: 297 SLRCTIWM 304
>11_01_0689 -
5678227-5678343,5678475-5678636,5678751-5678846,
5679345-5679406,5679648-5679723,5679847-5679929,
5680525-5680853,5681402-5681448,5681707-5681843,
5682093-5682126
Length = 380
Score = 75.4 bits (177), Expect = 1e-14
Identities = 32/70 (45%), Positives = 48/70 (68%)
Frame = +2
Query: 2 PFQLVTGRTWKGTAFGGYKSRESVPKLVDEYLEKKLPLDEFVTHNVPLKEINEAFHLMHA 181
P + RT +GT FG YK R +P +V+ Y+ K+L L++F+TH+VP EIN AF LM +
Sbjct: 309 PTNFLNERTLRGTFFGNYKPRTDLPGVVEMYMNKELELEKFITHSVPFSEINTAFDLMLS 368
Query: 182 GKSIRAVVDM 211
G+S+R ++ M
Sbjct: 369 GESLRCIIRM 378
>07_03_1306 -
25643469-25643609,25644008-25644169,25644496-25644659,
25645117-25645192,25645569-25645651,25646393-25646669
Length = 300
Score = 71.3 bits (167), Expect = 2e-13
Identities = 30/68 (44%), Positives = 47/68 (69%)
Frame = +2
Query: 8 QLVTGRTWKGTAFGGYKSRESVPKLVDEYLEKKLPLDEFVTHNVPLKEINEAFHLMHAGK 187
+++ GR+ G+ FGG K + +P L +YL+K+L L+EF+TH + +EIN AF L+ GK
Sbjct: 223 EILRGRSVIGSLFGGIKPKNDIPMLAQKYLDKELELEEFITHEMGFEEINRAFELLTQGK 282
Query: 188 SIRAVVDM 211
SIR ++ M
Sbjct: 283 SIRCIIWM 290
>02_05_0070 - 25584690-25584806,25585151-25585312,25585396-25585491,
25585894-25585955,25586035-25586110,25586195-25586277,
25586456-25586778,25586882-25586928,25587014-25587150,
25587250-25587322,25588159-25588251,25588543-25588632,
25588684-25588786,25588869-25588981,25589181-25589778,
25589888-25590065,25590277-25590296,25590713-25590882,
25591245-25591485,25592997-25593199
Length = 994
Score = 66.1 bits (154), Expect = 6e-12
Identities = 28/67 (41%), Positives = 45/67 (67%)
Frame = +2
Query: 11 LVTGRTWKGTAFGGYKSRESVPKLVDEYLEKKLPLDEFVTHNVPLKEINEAFHLMHAGKS 190
L++GRT KG+ FGG++ + +P LVD+Y K++ +D+ VTH++ IN+A LM K
Sbjct: 926 LLSGRTLKGSLFGGWRPKSDLPLLVDKYANKEIQVDDLVTHDLSFDYINKALELMLENKC 985
Query: 191 IRAVVDM 211
+R V+ M
Sbjct: 986 LRCVIHM 992
>03_01_0636 -
4664472-4664588,4664695-4664856,4664984-4665061,
4665157-4665221,4665476-4665558,4666052-4666414,
4666512-4666555,4666632-4666765,4666881-4666917
Length = 360
Score = 61.7 bits (143), Expect = 1e-10
Identities = 28/69 (40%), Positives = 44/69 (63%)
Frame = +2
Query: 5 FQLVTGRTWKGTAFGGYKSRESVPKLVDEYLEKKLPLDEFVTHNVPLKEINEAFHLMHAG 184
F+ + G+ G+ FGG K + +P L ++ + K+L L++ VTH V L EIN AF L+ G
Sbjct: 290 FEFLFGKCVMGSLFGGAKPKTDIPILAEKCMNKELELEKLVTHEVGLTEINTAFDLLLQG 349
Query: 185 KSIRAVVDM 211
KS+R ++ M
Sbjct: 350 KSLRCIIWM 358
>10_01_0343 -
3773274-3773390,3773476-3773637,3773758-3773853,
3773956-3774009
Length = 142
Score = 55.6 bits (128), Expect = 9e-09
Identities = 23/70 (32%), Positives = 44/70 (62%), Gaps = 2/70 (2%)
Frame = +2
Query: 2 PFQLVTGRTWKGTAFGGYKSRESVPKLVDEYLEKKLPL--DEFVTHNVPLKEINEAFHLM 175
P +L GR G FG +K + +P++V++ ++ ++ + D F+T +P +IN+AF L+
Sbjct: 71 PMELFDGRRITGCVFGDFKGKSQLPEIVEKCMQGEININFDGFITQELPFADINKAFQLL 130
Query: 176 HAGKSIRAVV 205
GKS+R ++
Sbjct: 131 EEGKSLRCLL 140
>09_02_0499 -
9917891-9918148,9918240-9918494,9918769-9918940,
9919056-9919283,9919628-9919761,9919842-9919925,
9920007-9920297,9920569-9920901,9921029-9921171,
9921266-9921379,9921470-9921626,9921709-9921812,
9921914-9922074,9922158-9922474,9922574-9922855,
9923205-9923506,9923603-9923693,9923864-9923917,
9924052-9924128,9924213-9924372,9924473-9924557,
9924635-9924723,9925791-9925925
Length = 1341
Score = 27.9 bits (59), Expect = 2.1
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = +2
Query: 137 VPLKEINEAFHLMHAGKSIRA 199
VP+KE EAF H G++IR+
Sbjct: 352 VPVKEFAEAFQSFHVGQAIRS 372
>12_01_0505 -
4005211-4005234,4005235-4005432,4005522-4006006,
4006533-4006700,4007128-4007203,4007327-4007409,
4007511-4007589,4007685-4007753,4008174-4008266,
4008668-4008713,4009398-4009522
Length = 481
Score = 26.6 bits (56), Expect = 4.9
Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 2/58 (3%)
Frame = -1
Query: 319 VNKMHVVYLNYTCSKC*RKKV*QVYKNSINIFP*KLHVNYCT--DRFSSMHQMECLID 152
+NK H +YL++ CSK V N+ +F ++H + T R S + +M+ ID
Sbjct: 288 LNKGHPLYLSHLCSKMKNANVTSAKSNTFQLFL-RVHPSLMTYSTRSSLLWEMKREID 344
>06_01_1133 +
9364842-9364850,9364929-9365048,9365157-9365476,
9366267-9366428,9367151-9367235,9367352-9367501,
9367588-9367635,9367705-9367773,9367897-9368600,
9369426-9369561,9369636-9369856,9370355-9370486,
9371316-9371406,9371878-9371925,9372004-9372132,
9372357-9372626
Length = 897
Score = 26.6 bits (56), Expect = 4.9
Identities = 10/29 (34%), Positives = 18/29 (62%)
Frame = -1
Query: 202 YCTDRFSSMHQMECLIDLLQRHIVSDKFI 116
+C + S + C+ID L++ I SD+F+
Sbjct: 12 FCEEGSSESGYVLCVIDSLKKKITSDRFV 40
>03_03_0199 -
15363680-15363739,15363879-15364070,15364154-15364605,
15364699-15365101
Length = 368
Score = 26.6 bits (56), Expect = 4.9
Identities = 19/44 (43%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Frame = +2
Query: 83 VDEYLEKKLPLDEFVTHNVPLKEINEAF--HLMHAGKSIRAVVD 208
VD Y E P+D F + EINEA L+H G + AVVD
Sbjct: 185 VDGYDEAICPMDSFSQGPILDDEINEAIVRPLVH-GAKLHAVVD 227
>06_03_1457 - 30287185-30287287,30287691-30287759,30288212-30288351,
30288447-30288641,30288743-30289363,30289688-30290257,
30290332-30293638,30293764-30293863,30293978-30295014,
30295256-30295604,30296299-30296374,30296456-30297022,
30297094-30297238,30298281-30298405,30298491-30298582,
30298646-30298828,30298946-30299058,30299499-30299649,
30299720-30299882
Length = 2701
Score = 25.8 bits (54), Expect = 8.5
Identities = 13/33 (39%), Positives = 16/33 (48%)
Frame = -3
Query: 125 QIHLKAASSPSTHLQALVHFLYFCNLQKLFPSR 27
Q HLK A + H V ++ C L KLF R
Sbjct: 1221 QDHLKDAVNGLNHESLNVRYMVACELNKLFNDR 1253
>05_06_0214 -
26425100-26425922,26426008-26426058,26426183-26426256,
26426344-26426441,26426547-26426671,26426724-26426957,
26426992-26427037,26427101-26427152,26427331-26427367,
26427521-26427637,26428287-26428352,26428439-26428518,
26429102-26429311,26429650-26429739,26430093-26430182,
26430280-26430411,26430876-26431094,26431203-26431286,
26431543-26431656,26431857-26431914,26432535-26432602,
26432847-26432962,26433495-26433574,26433839-26433912
Length = 1045
Score = 25.8 bits (54), Expect = 8.5
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = +2
Query: 2 PFQLVTGRTWKGTAFGGYKSR 64
PFQ V GR+ GT + G ++R
Sbjct: 443 PFQEVLGRSVNGTTYAGIRAR 463
>01_05_0659 -
24061318-24061575,24061664-24061918,24062001-24062172,
24062258-24062381,24062442-24062485,24063601-24063734,
24063822-24063905,24064100-24064390,24064713-24065045,
24065145-24065389,24065644-24065910,24065997-24066157,
24066253-24066569,24066665-24066946,24067024-24067325,
24067398-24067488,24067796-24067849,24067963-24068039,
24068159-24068318,24068653-24068737,24069029-24069238,
24069344-24069732
Length = 1444
Score = 25.8 bits (54), Expect = 8.5
Identities = 17/55 (30%), Positives = 26/55 (47%), Gaps = 7/55 (12%)
Frame = +2
Query: 50 GYK--SRESVPKLVDEYLEKKLPLDEFVTHN-----VPLKEINEAFHLMHAGKSI 193
G+K R+ V + E +K ++ H+ VP+K+ AF H GKSI
Sbjct: 441 GFKCPERKGVADFLQEVTSRKDQKQYWMQHDKPYRYVPVKDFASAFQSFHTGKSI 495
>01_05_0658 -
24043655-24043945,24044003-24044257,24044359-24044530,
24044617-24044844,24045688-24045821,24045908-24045991,
24046202-24046492,24046571-24046903,24047002-24047246,
24047476-24047742,24048305-24048465,24048556-24048872,
24048966-24049247,24049325-24049626,24049699-24049789,
24049881-24049934,24050028-24050104,24050192-24050367,
24051331-24051540,24051626-24052029
Length = 1457
Score = 25.8 bits (54), Expect = 8.5
Identities = 17/55 (30%), Positives = 25/55 (45%), Gaps = 7/55 (12%)
Frame = +2
Query: 50 GYK--SRESVPKLVDEYLEKKLPLDEFVTHN-----VPLKEINEAFHLMHAGKSI 193
G+K R+ V + E +K + H+ VP+KE AF H G+SI
Sbjct: 423 GFKCPERKGVADFLQEVTSRKDQKQYWAQHDKPYRYVPIKEFASAFQSFHTGRSI 477
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,905,133
Number of Sequences: 37544
Number of extensions: 160184
Number of successful extensions: 340
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 337
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 340
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 459426840
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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