Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc20d22
         (334 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY739659-1|AAU85298.1|  288|Apis mellifera hyperpolarization-act...    26   0.14 
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    26   0.14 
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    26   0.14 
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    20   6.8  
DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    20   9.1  

>AY739659-1|AAU85298.1|  288|Apis mellifera
           hyperpolarization-activated ion channelvariant T
           protein.
          Length = 288

 Score = 25.8 bits (54), Expect = 0.14
 Identities = 10/34 (29%), Positives = 20/34 (58%)
 Frame = +2

Query: 95  LEKKLPLDEFVTHNVPLKEINEAFHLMHAGKSIR 196
           L   +PLD         ++ +E+F ++HAG+++R
Sbjct: 173 LISSIPLDYIFLIFNQFQDFSESFQILHAGRALR 206



 Score = 19.8 bits (39), Expect = 9.1
 Identities = 6/8 (75%), Positives = 7/8 (87%)
 Frame = +1

Query: 181 WKIYPCSS 204
           W I+PCSS
Sbjct: 79  WVIHPCSS 86


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 25.8 bits (54), Expect = 0.14
 Identities = 10/34 (29%), Positives = 20/34 (58%)
 Frame = +2

Query: 95  LEKKLPLDEFVTHNVPLKEINEAFHLMHAGKSIR 196
           L   +PLD         ++ +E+F ++HAG+++R
Sbjct: 173 LISSIPLDYIFLIFNQFQDFSESFQILHAGRALR 206



 Score = 19.8 bits (39), Expect = 9.1
 Identities = 6/8 (75%), Positives = 7/8 (87%)
 Frame = +1

Query: 181 WKIYPCSS 204
           W I+PCSS
Sbjct: 79  WVIHPCSS 86


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 25.8 bits (54), Expect = 0.14
 Identities = 10/34 (29%), Positives = 20/34 (58%)
 Frame = +2

Query: 95  LEKKLPLDEFVTHNVPLKEINEAFHLMHAGKSIR 196
           L   +PLD         ++ +E+F ++HAG+++R
Sbjct: 173 LISSIPLDYIFLIFNQFQDFSESFQILHAGRALR 206



 Score = 19.8 bits (39), Expect = 9.1
 Identities = 6/8 (75%), Positives = 7/8 (87%)
 Frame = +1

Query: 181 WKIYPCSS 204
           W I+PCSS
Sbjct: 79  WVIHPCSS 86


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 20.2 bits (40), Expect = 6.8
 Identities = 13/48 (27%), Positives = 21/48 (43%), Gaps = 7/48 (14%)
 Frame = +1

Query: 139 AAEGDQ*GIPFDACWKIYPCSS-------*HVISKEKYLYYFCTLVKP 261
           + E D  G+P +   K YPC          ++  + K L+Y   L+ P
Sbjct: 198 SVEWDILGVPAERHKKYYPCCDEPYPDIFFNITLRRKTLFYTVNLIVP 245


>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 19.8 bits (39), Expect = 9.1
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +2

Query: 215 FLRKNIYTIFVHLLNLFSSAFTTSIIK 295
           F+R  I+T  V++ N  SSA T + +K
Sbjct: 92  FVRDLIWTPTVYVSNEPSSAITGNNVK 118


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 99,314
Number of Sequences: 438
Number of extensions: 1918
Number of successful extensions: 8
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  7466580
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)