Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc20d20
(565 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_08_0024 - 14238028-14238091,14238193-14238263,14238607-142387... 218 3e-57
03_01_0430 + 3320198-3320215,3320496-3320642,3321157-3321268,332... 214 5e-56
10_08_0025 - 14243249-14243377,14243935-14244174,14244266-142443... 175 3e-44
04_03_0484 + 16455597-16455809,16456417-16456537,16456728-164568... 174 4e-44
02_03_0283 + 17267199-17267334,17267424-17267959 34 0.068
02_03_0282 - 17264970-17265505,17265665-17265779 32 0.36
02_03_0284 + 17275004-17275675 30 1.1
02_01_0153 - 1073790-1074026,1074110-1074595,1074686-1075213,107... 29 1.9
04_04_1436 + 33591570-33591728,33594027-33594101,33594487-335945... 29 2.6
01_01_0268 - 2214923-2215048,2215131-2215286,2215371-2215469,221... 29 2.6
08_01_0584 + 5180531-5180651,5180816-5181354 29 3.4
01_01_0270 - 2225250-2225263,2225549-2225732,2225817-2225972,222... 29 3.4
08_02_0914 - 22546100-22546759 28 4.5
11_06_0128 - 20389375-20389781,20389988-20392787 27 7.8
07_03_1462 + 26716197-26716484,26716618-26716746,26716963-267170... 27 7.8
05_02_0052 + 6124880-6124956,6125097-6125250,6125327-6125920,612... 27 7.8
04_04_0804 + 28171110-28171176,28171829-28172317,28172384-28173072 27 7.8
04_03_0024 - 9623178-9624001,9624502-9624678,9625144-9625305,962... 27 7.8
>10_08_0024 -
14238028-14238091,14238193-14238263,14238607-14238731,
14238842-14238956,14239076-14239170,14239282-14239393,
14239481-14239490,14239808-14239890,14240044-14240061
Length = 230
Score = 218 bits (532), Expect = 3e-57
Identities = 95/165 (57%), Positives = 125/165 (75%)
Frame = +1
Query: 67 KMVQAWYMDSETTDQRLQHHKNPPEYISLDDLFSKTGVEYFKINIDTYKTDGVLEKLKNE 246
++++AWYMD DQRL HH+ P E+I +D L ++ GV +++N D ++ L++++
Sbjct: 42 EVIEAWYMDDSEEDQRLPHHREPKEFIHVDKL-TELGVISWRLNPDNWENCENLKRIREA 100
Query: 247 RGYTYEDEMVCSKECLPNYEEKIKSFYTEHLHTDEEIRFILDGSGYFDVRDGEDQWIRIA 426
RGY+Y D E LPNYE KIKSF+ EHLHTDEEIR+ L+GSGYFDVRD DQWIRIA
Sbjct: 101 RGYSYVDICDVCPEKLPNYETKIKSFFEEHLHTDEEIRYCLEGSGYFDVRDQNDQWIRIA 160
Query: 427 VSKGDMLVIPSGIYHRFTLDTNNYIKAKRFFIGEPVWLPYNRPAD 561
+ KG M+V+P+G+YHRFTLDT+NYIKA R F+G+PVW PYNRP D
Sbjct: 161 LKKGGMIVLPAGMYHRFTLDTDNYIKAMRLFVGDPVWTPYNRPHD 205
>03_01_0430 +
3320198-3320215,3320496-3320642,3321157-3321268,
3321389-3321504,3321557-3321671,3321791-3321915,
3322145-3322215,3322308-3322368
Length = 254
Score = 214 bits (522), Expect = 5e-56
Identities = 97/172 (56%), Positives = 128/172 (74%), Gaps = 7/172 (4%)
Frame = +1
Query: 67 KMVQAWYMDSETTDQRLQHHKNPPEYISLDDLFSKTGVEYFKINIDTYKTDGVLEKLKNE 246
++++AWYMD DQRL HH+ P E+I L L S+ G+ +++N D ++ D L+K++
Sbjct: 60 EVIEAWYMDDSEEDQRLPHHREPKEFIPLSKL-SELGILSWRLNADDWENDENLKKIREA 118
Query: 247 RGYTYE---DEMV--CS--KECLPNYEEKIKSFYTEHLHTDEEIRFILDGSGYFDVRDGE 405
RGY+Y E+V C E LPNYE K+K+F+ EHLHTDEEIR+ L+GSGYFDVRD
Sbjct: 119 RGYSYMVCISELVDICDVCPEKLPNYEAKLKNFFEEHLHTDEEIRYCLEGSGYFDVRDQN 178
Query: 406 DQWIRIAVSKGDMLVIPSGIYHRFTLDTNNYIKAKRFFIGEPVWLPYNRPAD 561
DQWIR+AV KG M+V+P+G+YHRFTLD++NYIKA R F+GEPVW PYNRP D
Sbjct: 179 DQWIRVAVKKGGMIVLPAGMYHRFTLDSDNYIKAMRLFVGEPVWTPYNRPHD 230
>10_08_0025 -
14243249-14243377,14243935-14244174,14244266-14244360,
14245120-14245198,14249528-14250202,14250288-14250338,
14250439-14250813
Length = 547
Score = 175 bits (425), Expect = 3e-44
Identities = 77/146 (52%), Positives = 106/146 (72%)
Frame = +1
Query: 127 KNPPEYISLDDLFSKTGVEYFKINIDTYKTDGVLEKLKNERGYTYEDEMVCSKECLPNYE 306
+NP E + L L + GV Y+ ++ +++ L K++ ERGY+Y D + L NYE
Sbjct: 381 ENPNELLPLSRL-EEIGVLYWHLDPKKSESEEELTKIRRERGYSYFDLTEICPDKLENYE 439
Query: 307 EKIKSFYTEHLHTDEEIRFILDGSGYFDVRDGEDQWIRIAVSKGDMLVIPSGIYHRFTLD 486
EK+KSFY EH+H DEEIR+ L+GSGYFDVRD +D+WIRI + +GDM+++P+GIYHRF +D
Sbjct: 440 EKLKSFYCEHIHADEEIRYCLEGSGYFDVRDKDDKWIRIWIKEGDMIILPAGIYHRFIVD 499
Query: 487 TNNYIKAKRFFIGEPVWLPYNRPADE 564
+NNYIK R FIGEPVW YNRP ++
Sbjct: 500 SNNYIKLMRLFIGEPVWTAYNRPQED 525
>04_03_0484 +
16455597-16455809,16456417-16456537,16456728-16456822,
16458633-16458747,16458868-16458992,16459354-16459460,
16459548-16459626
Length = 284
Score = 174 bits (424), Expect = 4e-44
Identities = 85/182 (46%), Positives = 116/182 (63%), Gaps = 15/182 (8%)
Frame = +1
Query: 61 VFKMVQAWYMDSETT---DQRLQHHKNPPEYISLDDLFSKTGVEYFKINIDTYKTDGVLE 231
V ++VQAWYMD + DQRL H + P + + L L G+ +++ D ++ D L+
Sbjct: 74 VEEVVQAWYMDDDDNAEEDQRLPHRRQPDDLLPLAKLLD-LGLVAMRLDADNHEHDENLK 132
Query: 232 KLKNERGYTYEDEMVCSKECLPNYEEKIKSFYTEHLHTDEEIRFILDGSGYFDVRDGEDQ 411
++ +RGY + D + + E +PNYE IK F+ EHLHTDEE+R+ LDGSGYFDVRD D+
Sbjct: 133 IMREQRGYLHMDIVELTPEKMPNYEVMIKRFFEEHLHTDEEVRYCLDGSGYFDVRDENDK 192
Query: 412 WIRIAVSKGDMLVIPSGIYHRFTLDTNNYIK------------AKRFFIGEPVWLPYNRP 555
W+R++V KG ++V+P+GIYHRFTLDTNNYIK R F G P W YNRP
Sbjct: 193 WVRVSVRKGALIVVPAGIYHRFTLDTNNYIKMGPGGLLFGFLQTMRLFSGGPDWTAYNRP 252
Query: 556 AD 561
D
Sbjct: 253 HD 254
>02_03_0283 + 17267199-17267334,17267424-17267959
Length = 223
Score = 34.3 bits (75), Expect = 0.068
Identities = 19/53 (35%), Positives = 31/53 (58%), Gaps = 3/53 (5%)
Frame = +1
Query: 352 EIRFILDGSGY--FDVRDGEDQWIRIAVSKGDMLVIPSGIYH-RFTLDTNNYI 501
EI +L+GS Y F + + E++ ++KGD+ V P G+ H +F TNN +
Sbjct: 122 EIPTVLEGSLYVGFVISNPENKLFTKVLNKGDVFVFPQGLVHFQFNNGTNNAV 174
>02_03_0282 - 17264970-17265505,17265665-17265779
Length = 216
Score = 31.9 bits (69), Expect = 0.36
Identities = 21/60 (35%), Positives = 32/60 (53%), Gaps = 4/60 (6%)
Frame = +1
Query: 334 HLHTDE-EIRFILDGSGY--FDVRDGEDQWIRIAVSKGDMLVIPSGIYH-RFTLDTNNYI 501
H+H EI IL+GS Y F + E++ ++KGD+ V P G+ H +F T + I
Sbjct: 108 HIHPRATEILTILEGSLYVGFVTSNPENKLFTKVLNKGDVFVFPQGLIHFQFNYGTKDVI 167
>02_03_0284 + 17275004-17275675
Length = 223
Score = 30.3 bits (65), Expect = 1.1
Identities = 17/53 (32%), Positives = 29/53 (54%), Gaps = 3/53 (5%)
Frame = +1
Query: 352 EIRFILDGSGY--FDVRDGEDQWIRIAVSKGDMLVIPSGIYH-RFTLDTNNYI 501
EI +L+GS Y F + E++ ++KGD+ V P G+ H +F T + +
Sbjct: 122 EILTVLEGSLYVGFVTSNPENKLFTKVINKGDVFVFPKGLVHFQFNYGTTDAV 174
>02_01_0153 -
1073790-1074026,1074110-1074595,1074686-1075213,
1075421-1075513,1075620-1075671,1075800-1075904,
1076020-1076180
Length = 553
Score = 29.5 bits (63), Expect = 1.9
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = +1
Query: 109 QRLQHHKNPPEYISLDDLFSKTGVEYFKINIDTYKT 216
Q L HK P ++ L D + G+E +N+ TYKT
Sbjct: 431 QVLWEHK-PGGFVRLMDAMNALGLEVINVNVTTYKT 465
>04_04_1436 +
33591570-33591728,33594027-33594101,33594487-33594543,
33594635-33594795,33594954-33595094,33595344-33595446,
33595535-33595634,33595745-33595983
Length = 344
Score = 29.1 bits (62), Expect = 2.6
Identities = 11/29 (37%), Positives = 15/29 (51%)
Frame = -1
Query: 460 RSG*PACLPWTRQYGSIDPHHLSRQSNQS 374
R G P C P +G++DPH +R S
Sbjct: 88 RGGIPICFPQFSNFGNLDPHGFARNRTWS 116
>01_01_0268 -
2214923-2215048,2215131-2215286,2215371-2215469,
2215557-2215631,2215732-2215800,2216515-2216713,
2220162-2220267,2221117-2221588
Length = 433
Score = 29.1 bits (62), Expect = 2.6
Identities = 13/29 (44%), Positives = 18/29 (62%)
Frame = +1
Query: 295 PNYEEKIKSFYTEHLHTDEEIRFILDGSG 381
P +E I + +TE+L EEIR +LD G
Sbjct: 49 PKIKEAITAKFTEYLRRAEEIRAVLDEGG 77
>08_01_0584 + 5180531-5180651,5180816-5181354
Length = 219
Score = 28.7 bits (61), Expect = 3.4
Identities = 16/48 (33%), Positives = 28/48 (58%), Gaps = 3/48 (6%)
Frame = +1
Query: 352 EIRFILDGSGY--FDVRDGEDQWIRIAVSKGDMLVIPSGIYH-RFTLD 486
EI +L+G+ Y F + +++ ++KGD+ V P G+ H +F LD
Sbjct: 119 EIFTVLEGTLYVGFVTSNPDNKLFSKVLNKGDVFVFPKGLIHFQFNLD 166
>01_01_0270 -
2225250-2225263,2225549-2225732,2225817-2225972,
2226276-2226374,2226489-2226563,2226682-2226750,
2226917-2227115,2227492-2227597,2228118-2228526
Length = 436
Score = 28.7 bits (61), Expect = 3.4
Identities = 12/27 (44%), Positives = 18/27 (66%)
Frame = +1
Query: 295 PNYEEKIKSFYTEHLHTDEEIRFILDG 375
P ++ I + +TE+L EEIR +LDG
Sbjct: 49 PKIKDAIAAKFTEYLRRAEEIRAVLDG 75
>08_02_0914 - 22546100-22546759
Length = 219
Score = 28.3 bits (60), Expect = 4.5
Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 4/50 (8%)
Frame = +1
Query: 334 HLH-TDEEIRFILDGS---GYFDVRDGEDQWIRIAVSKGDMLVIPSGIYH 471
H H E+ ++LDG+ G+ D + + VSKG M V P G+ H
Sbjct: 110 HTHPAGSELLYVLDGALVAGFISSSDNKVYYKE--VSKGGMFVFPQGLLH 157
>11_06_0128 - 20389375-20389781,20389988-20392787
Length = 1068
Score = 27.5 bits (58), Expect = 7.8
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = -1
Query: 325 KKILSSPRNSEDIPWNRPSHLHMCN 251
K +LSSP +S WN S +H C+
Sbjct: 52 KSMLSSPSSSPLASWNSTSSIHHCS 76
>07_03_1462 +
26716197-26716484,26716618-26716746,26716963-26717055,
26717581-26717721,26718021-26718089,26718207-26718290,
26718784-26718964,26719055-26719171,26719245-26719303,
26719595-26719729,26719865-26720014,26720170-26720208
Length = 494
Score = 27.5 bits (58), Expect = 7.8
Identities = 20/82 (24%), Positives = 33/82 (40%), Gaps = 5/82 (6%)
Frame = +1
Query: 298 NYEEK-IKSFYTEHLHT-DEEIRFILDGSGYFDVRDGEDQWIRIAVSKGDMLVIPSGIYH 471
+YEE + S+ E L + +R + GY D+ QW R+ +I I
Sbjct: 274 SYEENDVSSYELEGLESLGSMLRIVSQSDGYVDLSRSTIQWFRVQPEGNKKEIISGAIKQ 333
Query: 472 RFT---LDTNNYIKAKRFFIGE 528
+ D Y++A+ GE
Sbjct: 334 AYAPEPHDVGRYLQAEINHCGE 355
>05_02_0052 +
6124880-6124956,6125097-6125250,6125327-6125920,
6126344-6126757,6126835-6126846
Length = 416
Score = 27.5 bits (58), Expect = 7.8
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = +1
Query: 70 MVQAWYMDSETTDQRLQHHKNPP 138
M++ + D TTDQ L+HH+ P
Sbjct: 24 MIRCSWSDMATTDQLLRHHEQEP 46
>04_04_0804 + 28171110-28171176,28171829-28172317,28172384-28173072
Length = 414
Score = 27.5 bits (58), Expect = 7.8
Identities = 12/37 (32%), Positives = 16/37 (43%), Gaps = 1/37 (2%)
Frame = -1
Query: 502 LCSYWCPK*TCGRYRSG*P-ACLPWTRQYGSIDPHHL 395
+C WC C +G P +C PW + PH L
Sbjct: 56 VCKSWC----CAAIAAGVPRSCTPWLMSWSDKPPHEL 88
>04_03_0024 -
9623178-9624001,9624502-9624678,9625144-9625305,
9625520-9626032,9626801-9629153
Length = 1342
Score = 27.5 bits (58), Expect = 7.8
Identities = 14/44 (31%), Positives = 22/44 (50%)
Frame = +1
Query: 415 IRIAVSKGDMLVIPSGIYHRFTLDTNNYIKAKRFFIGEPVWLPY 546
++I +S G+ IY + NN KR+F+ PV LP+
Sbjct: 746 VQIPLSYGEDKPRSKRIYKHQNRNNNNIRTKKRYFLRRPVRLPF 789
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,340,789
Number of Sequences: 37544
Number of extensions: 364246
Number of successful extensions: 920
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 901
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 916
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1293275844
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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