Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc20d19
         (658 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q1Z8A8 Cluster: Putative uncharacterized protein; n=1; ...    33   6.0  
UniRef50_UPI0000DB77F0 Cluster: PREDICTED: similar to dpy-19-lik...    33   8.0  

>UniRef50_Q1Z8A8 Cluster: Putative uncharacterized protein; n=1;
           Photobacterium profundum 3TCK|Rep: Putative
           uncharacterized protein - Photobacterium profundum 3TCK
          Length = 400

 Score = 33.1 bits (72), Expect = 6.0
 Identities = 23/60 (38%), Positives = 32/60 (53%), Gaps = 7/60 (11%)
 Frame = -3

Query: 419 LLYINILFSFEY-----IKNQILGEVFKIKH--GVILWLCSKCFFLNQGNDYESVIKVLV 261
           LL+I I F++EY     I   + G +F IK+     LWL + CF L     + SV KVL+
Sbjct: 147 LLFIWIDFNYEYLVLYFIPYLVFGLMFSIKYIKKTFLWLYNGCFNLEGSEQFFSVSKVLL 206


>UniRef50_UPI0000DB77F0 Cluster: PREDICTED: similar to dpy-19-like
           1, like; n=2; Apocrita|Rep: PREDICTED: similar to
           dpy-19-like 1, like - Apis mellifera
          Length = 691

 Score = 32.7 bits (71), Expect = 8.0
 Identities = 19/60 (31%), Positives = 33/60 (55%)
 Frame = -3

Query: 440 YIH*VFFLLYINILFSFEYIKNQILGEVFKIKHGVILWLCSKCFFLNQGNDYESVIKVLV 261
           Y+  ++ LLY +    F  +K +++G  +K  H  +L+ CS  F   Q   YE++IK L+
Sbjct: 357 YLKSIYALLYEDTAHVFNLLKTKLIG--YKDFH-TMLYTCSPEFDFLQYRSYEAIIKTLL 413


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 525,116,637
Number of Sequences: 1657284
Number of extensions: 9169975
Number of successful extensions: 18289
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 17652
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18287
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 49586781480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)