Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc20d19
         (658 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z93372-2|CAB07547.2|  505|Caenorhabditis elegans Hypothetical pr...    28   6.7  
AF067949-2|AAC19235.1|  357|Caenorhabditis elegans Hypothetical ...    28   6.7  
AF024503-3|AAG24098.3|  331|Caenorhabditis elegans Serpentine re...    28   6.7  

>Z93372-2|CAB07547.2|  505|Caenorhabditis elegans Hypothetical
           protein BE10.2 protein.
          Length = 505

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 16/41 (39%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
 Frame = -3

Query: 422 FLLYINILFSFEYIKNQI--LGEVFKIKHGVILWLCSKCFF 306
           FLL + I F FEY +N +  L    KI + V+   C   FF
Sbjct: 376 FLLLLAIFFHFEYDRNHLSYLDCTVKIAYFVVTMQCFGAFF 416


>AF067949-2|AAC19235.1|  357|Caenorhabditis elegans Hypothetical
           protein T10H9.1 protein.
          Length = 357

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 12/40 (30%), Positives = 23/40 (57%)
 Frame = -3

Query: 428 VFFLLYINILFSFEYIKNQILGEVFKIKHGVILWLCSKCF 309
           +  ++  N+L S  Y+ + I+GEV  +K G I+ +   C+
Sbjct: 234 ILLVVIFNVLPSLLYLYDMIIGEVHFMKWGPIITIGYHCY 273


>AF024503-3|AAG24098.3|  331|Caenorhabditis elegans Serpentine
           receptor, class j protein6 protein.
          Length = 331

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 20/60 (33%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
 Frame = -1

Query: 460 YFQYLENIFIKFFFCYT*IFYLALNTLKTKYWGKYLK*NMALFFGF-VQNVFF*IREMIT 284
           Y +YL  IF    +    +F   + T  +K+ GKY      L  GF V ++F+ I EM+T
Sbjct: 7   YHKYLPIIFGVLSYIVNPLFIYLVLTKSSKHMGKY----RFLLIGFAVFDIFYSIAEMLT 62


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,624,742
Number of Sequences: 27780
Number of extensions: 231533
Number of successful extensions: 462
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 440
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 462
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1465835342
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)