Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc20d19
         (658 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein RJP...    21   7.8  
DQ325124-1|ABD14138.1|  179|Apis mellifera complementary sex det...    21   7.8  
DQ325123-1|ABD14137.1|  179|Apis mellifera complementary sex det...    21   7.8  
DQ325087-1|ABD14101.1|  179|Apis mellifera complementary sex det...    21   7.8  
DQ325086-1|ABD14100.1|  179|Apis mellifera complementary sex det...    21   7.8  
DQ325085-1|ABD14099.1|  179|Apis mellifera complementary sex det...    21   7.8  
DQ325084-1|ABD14098.1|  179|Apis mellifera complementary sex det...    21   7.8  

>Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein
           RJP57-1 protein.
          Length = 544

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = -1

Query: 382 LKTKYWGKYLK*NMALFFGFVQN 314
           L T+ +GK +  N  LF G V N
Sbjct: 305 LNTQSFGKVVSKNGVLFLGLVGN 327


>DQ325124-1|ABD14138.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = +1

Query: 124 KIVGAVSEIQIIYNNYKQKLLV*RYKK*FY 213
           KI+ ++S      NN  +KL    YKK +Y
Sbjct: 80  KIISSLSNNYNYNNNNYKKLYCNNYKKLYY 109


>DQ325123-1|ABD14137.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = +1

Query: 124 KIVGAVSEIQIIYNNYKQKLLV*RYKK*FY 213
           KI+ ++S      NN  +KL    YKK +Y
Sbjct: 80  KIISSLSNNYNYNNNNYKKLYCNNYKKLYY 109


>DQ325087-1|ABD14101.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 11/31 (35%), Positives = 15/31 (48%)
 Frame = +1

Query: 124 KIVGAVSEIQIIYNNYKQKLLV*RYKK*FYF 216
           KI+ ++S   I  NNYK       Y K  Y+
Sbjct: 80  KIISSLSNNTIHNNNYKYNYNNNNYNKKLYY 110


>DQ325086-1|ABD14100.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 11/31 (35%), Positives = 15/31 (48%)
 Frame = +1

Query: 124 KIVGAVSEIQIIYNNYKQKLLV*RYKK*FYF 216
           KI+ ++S   I  NNYK       Y K  Y+
Sbjct: 80  KIISSLSNNTIHNNNYKYNYNNNNYNKKLYY 110


>DQ325085-1|ABD14099.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 11/31 (35%), Positives = 15/31 (48%)
 Frame = +1

Query: 124 KIVGAVSEIQIIYNNYKQKLLV*RYKK*FYF 216
           KI+ ++S   I  NNYK       Y K  Y+
Sbjct: 80  KIISSLSNNTIHNNNYKYNYNNNNYNKKLYY 110


>DQ325084-1|ABD14098.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 11/31 (35%), Positives = 15/31 (48%)
 Frame = +1

Query: 124 KIVGAVSEIQIIYNNYKQKLLV*RYKK*FYF 216
           KI+ ++S   I  NNYK       Y K  Y+
Sbjct: 80  KIISSLSNNTIHNNNYKYNYNNNNYNKKLYY 110


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 158,893
Number of Sequences: 438
Number of extensions: 3180
Number of successful extensions: 9
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 19734030
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)