Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc20d15
         (323 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces ...    28   0.30 
SPBC14F5.07 |||ER-localized ubiquitin ligase |Schizosaccharomyce...    27   0.93 
SPBC1773.04 |||flavonol reductase/cinnamoyl-CoA reductase family...    26   1.6  
SPAC1006.02 |||WD repeat protein, human GNB1L family|Schizosacch...    25   2.1  
SPBC23G7.06c |||conserved eukaryotic protein|Schizosaccharomyces...    25   2.8  
SPCC1672.01 |||histidinol-phosphatase |Schizosaccharomyces pombe...    24   6.5  
SPAC4G8.13c |prz1||transcription factor Prz1 |Schizosaccharomyce...    23   8.6  
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha...    23   8.6  

>SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 2344

 Score = 28.3 bits (60), Expect = 0.30
 Identities = 13/46 (28%), Positives = 18/46 (39%)
 Frame = -1

Query: 233  WKLSSTKNNYKEYLTQFKSKHXXXXXXXXXXXXQSVHLDKKMLLIC 96
            W+   T NNY  YL  F++ H             S+    K  L+C
Sbjct: 1124 WEKFLTSNNYSNYLADFETTHAQIMEMKPWVGDTSLITQLKRFLMC 1169


>SPBC14F5.07 |||ER-localized ubiquitin ligase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1242

 Score = 26.6 bits (56), Expect = 0.93
 Identities = 14/43 (32%), Positives = 21/43 (48%)
 Frame = -2

Query: 259 SLNQIMIMFGNCHLQKIIIRNI*HSLRANINIILESSIIKGGN 131
           S N + + F + H Q +  R+   SLR   N+  +SSI    N
Sbjct: 304 SSNSVPVEFNSLHSQNVDYRDEVDSLRPQFNVDEQSSISHSSN 346


>SPBC1773.04 |||flavonol reductase/cinnamoyl-CoA reductase
           family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 336

 Score = 25.8 bits (54), Expect = 1.6
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = +2

Query: 116 CPNAQIAAFDNRRLKYNIDVCS*TVLNIPYNYF 214
           C NA IAA    ++K  + + S   L  P NYF
Sbjct: 106 CENALIAAAQEPKVKRFVYISSEAALKGPVNYF 138


>SPAC1006.02 |||WD repeat protein, human GNB1L
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 368

 Score = 25.4 bits (53), Expect = 2.1
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = -2

Query: 181 RANINIILESSIIKGGNLCIWTKKC 107
           RA+   IL   I+KGG LC   + C
Sbjct: 52  RAHTKTILGMQIVKGGALCTHGRDC 76


>SPBC23G7.06c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 745

 Score = 25.0 bits (52), Expect = 2.8
 Identities = 8/20 (40%), Positives = 14/20 (70%)
 Frame = -2

Query: 175 NINIILESSIIKGGNLCIWT 116
           N++ IL   ++K G +C+WT
Sbjct: 141 NLHEILYQKLVKQGLICLWT 160


>SPCC1672.01 |||histidinol-phosphatase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 306

 Score = 23.8 bits (49), Expect = 6.5
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = +3

Query: 84  QSVLTYQ*HFFVQMHRLPPLIIDDSSIILMFA 179
           Q  + Y  H +  M RL PL+I    +I +FA
Sbjct: 146 QLFIDYFEHQYDLMQRLHPLVIGHFDLICLFA 177


>SPAC4G8.13c |prz1||transcription factor Prz1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 681

 Score = 23.4 bits (48), Expect = 8.6
 Identities = 8/12 (66%), Positives = 11/12 (91%)
 Frame = -1

Query: 71  SSPSKNTVQNLH 36
           S+PSKN +Q+LH
Sbjct: 65  SNPSKNNIQHLH 76


>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 4196

 Score = 23.4 bits (48), Expect = 8.6
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = +3

Query: 69   RLYSNQSVLTYQ*HFFVQMHRLPPLIIDDSSIIL 170
            + Y N +  + +  + +Q ++ P LIID SS IL
Sbjct: 3478 KYYKNLTDYSLENIYIIQENKSPLLIIDPSSQIL 3511


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,199,107
Number of Sequences: 5004
Number of extensions: 20003
Number of successful extensions: 46
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 46
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 46
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 87815546
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)