Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc20d15
         (323 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_0641 - 30782235-30782423,30782498-30782605,30782848-307829...    26   5.9  
01_01_0456 - 3385907-3386174,3386283-3386470,3386542-3387027,338...    26   5.9  

>01_06_0641 -
           30782235-30782423,30782498-30782605,30782848-30782959,
           30783429-30783526,30784249-30784336,30784780-30784875,
           30785101-30785171,30786003-30786075,30787023-30787324,
           30787418-30787503,30788024-30788084,30789386-30789688
          Length = 528

 Score = 26.2 bits (55), Expect = 5.9
 Identities = 17/51 (33%), Positives = 25/51 (49%)
 Frame = -3

Query: 180 EQTSILYLSRLLSKAAICAFGQKNVIDMSIQIDLNIIVSFKEYGSKPALNK 28
           EQ+S   +S      A+C    K   D  + +D  IIV+ ++ GSK  L K
Sbjct: 175 EQSSRTTVSHQPKNHAVCP---KRADDKQLHMDNKIIVNKRKLGSKSCLRK 222


>01_01_0456 -
           3385907-3386174,3386283-3386470,3386542-3387027,
           3387123-3387184,3387269-3387429,3388215-3388290,
           3388382-3388471,3388591-3388659,3389498-3389756
          Length = 552

 Score = 26.2 bits (55), Expect = 5.9
 Identities = 9/14 (64%), Positives = 12/14 (85%)
 Frame = +2

Query: 263 LCCNHITSIKVLMA 304
           LCCNH+T IK L++
Sbjct: 410 LCCNHMTGIKGLLS 423


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,822,257
Number of Sequences: 37544
Number of extensions: 99896
Number of successful extensions: 129
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 129
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 129
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 423156300
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)