Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc20d15
         (323 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z70718-10|CAA94679.1|  512|Caenorhabditis elegans Hypothetical p...    26   7.2  
Z68879-11|CAA93090.1|  512|Caenorhabditis elegans Hypothetical p...    26   7.2  
Z47811-4|CAD57701.1|  422|Caenorhabditis elegans Hypothetical pr...    25   9.5  
U41746-5|AAT81186.1|  492|Caenorhabditis elegans Innexin protein...    25   9.5  
U41746-4|AAA83332.1|  559|Caenorhabditis elegans Innexin protein...    25   9.5  

>Z70718-10|CAA94679.1|  512|Caenorhabditis elegans Hypothetical
           protein C04G2.11 protein.
          Length = 512

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 14/52 (26%), Positives = 28/52 (53%)
 Frame = +3

Query: 30  YLMQVLNRIL*RRRLYSNQSVLTYQ*HFFVQMHRLPPLIIDDSSIILMFALK 185
           Y ++ L+R L  + L+SN+++L    H F+ +  L  +  D+ S  + +  K
Sbjct: 12  YAIKYLHRFLLPQTLFSNKNILRMFFHIFMWLFYLSEVDSDNCSFNVHYITK 63


>Z68879-11|CAA93090.1|  512|Caenorhabditis elegans Hypothetical
           protein C04G2.11 protein.
          Length = 512

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 14/52 (26%), Positives = 28/52 (53%)
 Frame = +3

Query: 30  YLMQVLNRIL*RRRLYSNQSVLTYQ*HFFVQMHRLPPLIIDDSSIILMFALK 185
           Y ++ L+R L  + L+SN+++L    H F+ +  L  +  D+ S  + +  K
Sbjct: 12  YAIKYLHRFLLPQTLFSNKNILRMFFHIFMWLFYLSEVDSDNCSFNVHYITK 63


>Z47811-4|CAD57701.1|  422|Caenorhabditis elegans Hypothetical
           protein K02C4.5 protein.
          Length = 422

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 13/39 (33%), Positives = 18/39 (46%)
 Frame = -1

Query: 224 SSTKNNYKEYLTQFKSKHXXXXXXXXXXXXQSVHLDKKM 108
           S T NN K+Y+   K++H             +V LDK M
Sbjct: 54  SRTANNLKKYMDPKKNEHLNLWKMCNVYSCGAVDLDKAM 92


>U41746-5|AAT81186.1|  492|Caenorhabditis elegans Innexin protein
          10, isoform b protein.
          Length = 492

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 9/19 (47%), Positives = 15/19 (78%)
 Frame = -3

Query: 96 SIQIDLNIIVSFKEYGSKP 40
          ++ I L ++VSFK++G KP
Sbjct: 32 NLLIGLAVLVSFKQFGGKP 50


>U41746-4|AAA83332.1|  559|Caenorhabditis elegans Innexin protein
          10, isoform a protein.
          Length = 559

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 9/19 (47%), Positives = 15/19 (78%)
 Frame = -3

Query: 96 SIQIDLNIIVSFKEYGSKP 40
          ++ I L ++VSFK++G KP
Sbjct: 32 NLLIGLAVLVSFKQFGGKP 50


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,485,502
Number of Sequences: 27780
Number of extensions: 107223
Number of successful extensions: 180
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 180
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 180
length of database: 12,740,198
effective HSP length: 71
effective length of database: 10,767,818
effective search space used: 387641448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)