Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc20d14
         (576 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF016445-9|AAC69061.1|  156|Caenorhabditis elegans Hypothetical ...    31   0.59 
U80442-5|AAB37668.2|  794|Caenorhabditis elegans Hypothetical pr...    30   1.4  
U70856-4|AAB09167.1| 2090|Caenorhabditis elegans Hypothetical pr...    29   3.1  
U70856-3|AAB09166.1| 2153|Caenorhabditis elegans Gei-4(four) int...    29   3.1  
AF098999-6|AAC68724.2|  787|Caenorhabditis elegans Half transpor...    28   4.1  
Z79603-10|CAI79233.1|  224|Caenorhabditis elegans Hypothetical p...    28   5.5  
U02289-1|AAA18934.1| 1439|Caenorhabditis elegans GTPase-activati...    27   7.2  
L16687-1|AAK71357.2| 1317|Caenorhabditis elegans Hypothetical pr...    27   7.2  
U80846-5|AAP82647.1|  825|Caenorhabditis elegans Hypothetical pr...    27   9.5  
U80846-4|AAC70889.1| 1032|Caenorhabditis elegans Hypothetical pr...    27   9.5  
U80846-3|AAC70890.1| 2232|Caenorhabditis elegans Hypothetical pr...    27   9.5  
AF125459-12|AAD12832.1|  533|Caenorhabditis elegans Hypothetical...    27   9.5  

>AF016445-9|AAC69061.1|  156|Caenorhabditis elegans Hypothetical
           protein T05B4.13 protein.
          Length = 156

 Score = 31.1 bits (67), Expect = 0.59
 Identities = 20/44 (45%), Positives = 26/44 (59%), Gaps = 2/44 (4%)
 Frame = -3

Query: 340 NSMSRRTCLDSPTFNTATGSFTASCSDMASTCITFN--SSGLAS 215
           N+  +RTC   P+  TA+ S TAS S   STC ++N  SS L S
Sbjct: 87  NTYCQRTCGRCPSSTTASSSSTASSS---STCTSYNADSSSLCS 127


>U80442-5|AAB37668.2|  794|Caenorhabditis elegans Hypothetical
           protein T20F5.6 protein.
          Length = 794

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 15/41 (36%), Positives = 22/41 (53%)
 Frame = +3

Query: 147 DPEAKAEYPRSNKLVIRQALLGPDAKPDELNVIQVEAMSLQ 269
           + EA A   R+ K +   ALL PDA PD  N   ++ + +Q
Sbjct: 690 EAEANANGQRAPKNIEMPALLNPDANPDAPNFKNLQPLQVQ 730


>U70856-4|AAB09167.1| 2090|Caenorhabditis elegans Hypothetical
           protein F57F4.4 protein.
          Length = 2090

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 14/35 (40%), Positives = 16/35 (45%), Gaps = 2/35 (5%)
 Frame = +2

Query: 317 ACTS--GH*IPRCACYIYSCSGFGASTLNWTPSPW 415
           ACT+  G  I  C CY   C+         TPSPW
Sbjct: 185 ACTNLAGTNIQGCCCYKQDCTSLAPMNNPPTPSPW 219


>U70856-3|AAB09166.1| 2153|Caenorhabditis elegans Gei-4(four)
           interacting proteinprotein 1 protein.
          Length = 2153

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 14/35 (40%), Positives = 16/35 (45%), Gaps = 2/35 (5%)
 Frame = +2

Query: 317 ACTS--GH*IPRCACYIYSCSGFGASTLNWTPSPW 415
           ACT+  G  I  C CY   C+         TPSPW
Sbjct: 185 ACTNLAGTNIQGCCCYKQDCTSLAPMNNPPTPSPW 219


>AF098999-6|AAC68724.2|  787|Caenorhabditis elegans Half transporter
           (pgp related)protein 4 protein.
          Length = 787

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 18/49 (36%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
 Frame = -3

Query: 415 PRRWCPIKCTGPEP*TRVNVTGAS-GNSMSRRTCLDSPTFNTATGSFTA 272
           PR+   +  +GP+P   +NV G S GN+MS    L S +F+ +  S T+
Sbjct: 742 PRKRPAVARSGPQPAASINVAGPSQGNAMS----LLSTSFSQSASSVTS 786


>Z79603-10|CAI79233.1|  224|Caenorhabditis elegans Hypothetical
           protein M163.11 protein.
          Length = 224

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 15/45 (33%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
 Frame = -3

Query: 346 SGNSMSRRTCLDSPTFNTATGSFTAS-CSDMASTCITFNSSGLAS 215
           S NS S  +  DS +  ++T S T + C D  STC ++ ++G  +
Sbjct: 104 SSNSSSSTSSSDSTSVVSSTSSSTTTTCVDSFSTCTSWAANGFCT 148


>U02289-1|AAA18934.1| 1439|Caenorhabditis elegans GTPase-activating
           protein protein.
          Length = 1439

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 16/39 (41%), Positives = 22/39 (56%)
 Frame = +1

Query: 76  VKSS*RTSFSMVSPFHHHISQRHGIQRQKQNTHAATSSS 192
           V SS +T  +  S FHHH SQ  G  R  +N  A T+++
Sbjct: 700 VPSSSQTMATTSSSFHHHSSQA-GPSRDIENGEAPTATA 737


>L16687-1|AAK71357.2| 1317|Caenorhabditis elegans Hypothetical
           protein C04D8.1 protein.
          Length = 1317

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 16/39 (41%), Positives = 22/39 (56%)
 Frame = +1

Query: 76  VKSS*RTSFSMVSPFHHHISQRHGIQRQKQNTHAATSSS 192
           V SS +T  +  S FHHH SQ  G  R  +N  A T+++
Sbjct: 578 VPSSSQTMATTSSSFHHHSSQA-GPSRDIENGEAPTATA 615


>U80846-5|AAP82647.1|  825|Caenorhabditis elegans Hypothetical
           protein K06A9.1c protein.
          Length = 825

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 18/63 (28%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
 Frame = -3

Query: 361 NVTGASGNSMSRRTCLDSPTFNTATGSFTASCSDMASTCI-TFNSSGLASGPNNA*RMTS 185
           + +GA+ +S S  T + SP+ +++ GS   S S  AST      S G    P ++   ++
Sbjct: 527 STSGATTSSGSAGTTMTSPSQSSSVGSSQGSTSPAASTTSGEMTSQGSTQTPGSSVSTSA 586

Query: 184 LLL 176
            +L
Sbjct: 587 AIL 589


>U80846-4|AAC70889.1| 1032|Caenorhabditis elegans Hypothetical
           protein K06A9.1a protein.
          Length = 1032

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 18/63 (28%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
 Frame = -3

Query: 361 NVTGASGNSMSRRTCLDSPTFNTATGSFTASCSDMASTCI-TFNSSGLASGPNNA*RMTS 185
           + +GA+ +S S  T + SP+ +++ GS   S S  AST      S G    P ++   ++
Sbjct: 734 STSGATTSSGSAGTTMTSPSQSSSVGSSQGSTSPAASTTSGEMTSQGSTQTPGSSVSTSA 793

Query: 184 LLL 176
            +L
Sbjct: 794 AIL 796


>U80846-3|AAC70890.1| 2232|Caenorhabditis elegans Hypothetical
           protein K06A9.1b protein.
          Length = 2232

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 18/63 (28%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
 Frame = -3

Query: 361 NVTGASGNSMSRRTCLDSPTFNTATGSFTASCSDMASTCI-TFNSSGLASGPNNA*RMTS 185
           + +GA+ +S S  T + SP+ +++ GS   S S  AST      S G    P ++   ++
Sbjct: 734 STSGATTSSGSAGTTMTSPSQSSSVGSSQGSTSPAASTTSGEMTSQGSTQTPGSSVSTSA 793

Query: 184 LLL 176
            +L
Sbjct: 794 AIL 796


>AF125459-12|AAD12832.1|  533|Caenorhabditis elegans Hypothetical
           protein Y25C1A.4 protein.
          Length = 533

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 18/49 (36%), Positives = 23/49 (46%)
 Frame = -3

Query: 361 NVTGASGNSMSRRTCLDSPTFNTATGSFTASCSDMASTCITFNSSGLAS 215
           + T A G++ S  T    PT +TA G  TAS +   ST  T      AS
Sbjct: 82  STTAAGGSTAS--TAAGGPTGSTAAGGSTASTAAGGSTASTAAGGSTAS 128


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,706,365
Number of Sequences: 27780
Number of extensions: 211569
Number of successful extensions: 661
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 627
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 659
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1194789454
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)