Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc20d02
         (552 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce...    29   0.60 
SPCC736.14 |dis1||microtubule-associated protein Dis1 |Schizosac...    27   1.4  
SPAC688.07c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    27   2.4  
SPBP8B7.26 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    26   3.2  
SPAC17G8.14c |pck1|SPAC22H10.01c|protein kinase C |Schizosacchar...    26   4.2  
SPAC17C9.03 |tif471||translation initiation factor eIF4G |Schizo...    25   7.4  
SPBC26H8.04c |||DEP domain|Schizosaccharomyces pombe|chr 2|||Manual    25   9.8  

>SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 604

 Score = 28.7 bits (61), Expect = 0.60
 Identities = 23/74 (31%), Positives = 33/74 (44%), Gaps = 1/74 (1%)
 Frame = +2

Query: 53  RAGHSYRKTS-TPSTGRREITQPPDPTRDPERDQLP*RTKSLRNTDVEGRGNPPQLHPKR 229
           +A  S+ ++S T ST       PP PTR  +R   P      +N + EGR  PP +    
Sbjct: 27  KASSSFHESSLTSSTHSHPSNPPPPPTRLHDRSFKP----VSKNYESEGRLTPPPVSMGY 82

Query: 230 VIDRETFKLFQGHD 271
              R + + FQ  D
Sbjct: 83  RYARSSKQSFQRED 96


>SPCC736.14 |dis1||microtubule-associated protein Dis1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 882

 Score = 27.5 bits (58), Expect = 1.4
 Identities = 14/42 (33%), Positives = 20/42 (47%)
 Frame = +2

Query: 20  PSPDEKRGGLSRAGHSYRKTSTPSTGRREITQPPDPTRDPER 145
           P P       S+     R TS+ ST  R+++QP D +  P R
Sbjct: 255 PKPHLSSKSSSQGNTLQRSTSSFSTPNRKVSQPSDFSASPSR 296


>SPAC688.07c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1038

 Score = 26.6 bits (56), Expect = 2.4
 Identities = 14/44 (31%), Positives = 20/44 (45%)
 Frame = +2

Query: 17  VPSPDEKRGGLSRAGHSYRKTSTPSTGRREITQPPDPTRDPERD 148
           +PSPDEK        H  +  +T ST    I     P ++PE +
Sbjct: 434 IPSPDEKLSRTDIDTHVKQLQTTKSTDSLSIPFVESPQQNPEEE 477


>SPBP8B7.26 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 262

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 19/55 (34%), Positives = 24/55 (43%)
 Frame = +2

Query: 8   PLPVPSPDEKRGGLSRAGHSYRKTSTPSTGRREITQPPDPTRDPERDQLP*RTKS 172
           PLPVP P       S A  S    +  ST    + +PP P   P+  +L  RT S
Sbjct: 187 PLPVPPPRRVSQNSSYASGSVPAATAASTA-SPVKKPPPPA-PPKPRRLAARTSS 239


>SPAC17G8.14c |pck1|SPAC22H10.01c|protein kinase C
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 988

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = +1

Query: 205 PTTITSQESHRQRNI*TVSRP*PRPSV 285
           PTTI ++E  R+RNI  +S    +PS+
Sbjct: 294 PTTIIAEELRRKRNIQEMSETSWKPSI 320


>SPAC17C9.03 |tif471||translation initiation factor eIF4G
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1403

 Score = 25.0 bits (52), Expect = 7.4
 Identities = 21/90 (23%), Positives = 32/90 (35%), Gaps = 2/90 (2%)
 Frame = +2

Query: 14   PVPSPD--EKRGGLSRAGHSYRKTSTPSTGRREITQPPDPTRDPERDQLP*RTKSLRNTD 187
            P  S D    + G +R G   R   + + G    T      +     + P R  S    +
Sbjct: 1303 PFSSSDWSNNKDGYARLGQGIRGLKSGTQGSHGPTSLSSMLKGGSVSRTPSRQNSALRRE 1362

Query: 188  VEGRGNPPQLHPKRVIDRETFKLFQGHDHD 277
               R  P  +    V    +F+L + HDHD
Sbjct: 1363 QSVRAPPSNV---AVTSANSFELLEEHDHD 1389


>SPBC26H8.04c |||DEP domain|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1496

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = +3

Query: 159 EGLNPFEILMWKDVGTHH 212
           +G  P     W+D+GTHH
Sbjct: 218 DGFLPDLFSFWRDLGTHH 235


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,548,540
Number of Sequences: 5004
Number of extensions: 56785
Number of successful extensions: 104
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 103
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 104
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 229961028
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)