Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc20d02
(552 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0477 + 3742751-3745200,3747192-3747502,3747886-3748232 35 0.038
04_03_0874 + 20467608-20468306,20468575-20468736,20470083-204701... 34 0.087
02_04_0559 + 23869791-23869907,23869993-23872131,23872235-238723... 32 0.35
05_01_0559 + 4890994-4891082,4891807-4892032,4892354-4892596 30 1.1
10_01_0341 - 3758835-3759599,3760302-3760349 29 1.9
12_02_0472 - 19469512-19469541,19469755-19469785,19469975-19471356 29 2.5
02_05_1308 + 35601314-35601390,35602486-35602566,35603513-356040... 29 2.5
07_03_0588 - 19715677-19715754,19715843-19715942,19716170-197162... 29 3.3
05_03_0458 + 14280953-14281866,14281964-14282912 28 4.3
08_02_1369 - 26445725-26445812,26446443-26446529,26446720-264469... 28 5.7
01_06_0752 + 31704071-31704787 28 5.7
01_05_0499 - 22750794-22751237,22751337-22751456 27 7.5
10_08_0466 + 18141369-18141432,18141628-18141711,18142603-18142793 27 10.0
07_03_0327 + 16817149-16817438,16818029-16818224,16818309-168196... 27 10.0
03_05_0640 - 26326832-26327166,26327295-26327529,26327665-263279... 27 10.0
03_05_0415 - 24019330-24019539,24020948-24021099,24021765-240218... 27 10.0
01_06_0740 + 31603996-31604820,31605080-31605391 27 10.0
01_06_0734 + 31569017-31569358,31569832-31569906,31570009-315701... 27 10.0
>12_01_0477 + 3742751-3745200,3747192-3747502,3747886-3748232
Length = 1035
Score = 35.1 bits (77), Expect = 0.038
Identities = 28/69 (40%), Positives = 30/69 (43%), Gaps = 6/69 (8%)
Frame = +2
Query: 20 PSPDEKRGGLSRAGHSYRKTSTPSTGR-REITQPPDPTRDPER--DQLP*RTKSL---RN 181
P D R G R H YR TPS GR I + P P RD R D P RT S R+
Sbjct: 99 PRDDRVRHG-DRRPHDYRPRRTPSPGRDHRIRRTPSPYRDRRRIPDYHPRRTPSPHRDRD 157
Query: 182 TDVEGRGNP 208
D G P
Sbjct: 158 RDRHAAGRP 166
>04_03_0874 +
20467608-20468306,20468575-20468736,20470083-20470160,
20470636-20470714,20470809-20470954,20471064-20471132,
20471262-20471430,20471526-20471776
Length = 550
Score = 33.9 bits (74), Expect = 0.087
Identities = 25/91 (27%), Positives = 34/91 (37%), Gaps = 3/91 (3%)
Frame = +2
Query: 8 PLPVPSPDEKRGGLSRAGHSYRKTSTPSTGRREITQPPDPTRDPERDQLP*RTKSLRNTD 187
P P P P GL R G + + RR + PP R P +SL D
Sbjct: 155 PAPPPKPSSGNNGLRRMGSGSSNNARIGSSRRPVAWPPVAVRSSASGSRPSSPRSL--AD 212
Query: 188 VEGRGNPPQLHP---KRVIDRETFKLFQGHD 271
EG + + P D E ++F+ HD
Sbjct: 213 SEGYNSADEQGPCYASNYYDSERERMFE-HD 242
>02_04_0559 +
23869791-23869907,23869993-23872131,23872235-23872336,
23872720-23872773,23872804-23872899
Length = 835
Score = 31.9 bits (69), Expect = 0.35
Identities = 15/39 (38%), Positives = 23/39 (58%)
Frame = +3
Query: 195 DVGTHHNYIPRES*TEKHLNCFKAMTTTLSNEETDARRR 311
D HN+ P +S + H+NC+K +T NEET +R +
Sbjct: 167 DAKLDHNHPPNQS-SVSHMNCYKKLTDA-KNEETASRSK 203
>05_01_0559 + 4890994-4891082,4891807-4892032,4892354-4892596
Length = 185
Score = 30.3 bits (65), Expect = 1.1
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = -1
Query: 201 PRPSTSVFRRDLVLHGNWSRSGSLVGSG 118
PR T ++ +L+GNW RSG V +G
Sbjct: 18 PRHETQPAHKESILYGNWMRSGRKVHTG 45
>10_01_0341 - 3758835-3759599,3760302-3760349
Length = 270
Score = 29.5 bits (63), Expect = 1.9
Identities = 17/69 (24%), Positives = 30/69 (43%)
Frame = +2
Query: 5 LPLPVPSPDEKRGGLSRAGHSYRKTSTPSTGRREITQPPDPTRDPERDQLP*RTKSLRNT 184
L + +P R + R G + + T + ++ PP P+ + L +RNT
Sbjct: 81 LEVTIPKNTNLRRTVVRIGQQSQSPAAVRTAQPKVVDPPPANSPPKNNNL------VRNT 134
Query: 185 DVEGRGNPP 211
V+ R +PP
Sbjct: 135 SVQSRIDPP 143
>12_02_0472 - 19469512-19469541,19469755-19469785,19469975-19471356
Length = 480
Score = 29.1 bits (62), Expect = 2.5
Identities = 14/41 (34%), Positives = 20/41 (48%)
Frame = +2
Query: 14 PVPSPDEKRGGLSRAGHSYRKTSTPSTGRREITQPPDPTRD 136
P PSP+ K G S S++ +T R +PP P R+
Sbjct: 206 PPPSPELKAGEKSTPPSSHKSKKKMTTTRTNSLKPPKPKRN 246
>02_05_1308 +
35601314-35601390,35602486-35602566,35603513-35604064,
35604998-35605408,35606830-35607544
Length = 611
Score = 29.1 bits (62), Expect = 2.5
Identities = 24/86 (27%), Positives = 36/86 (41%), Gaps = 4/86 (4%)
Frame = +2
Query: 35 KRGGLSRAGHSYRKTSTPSTGRREITQPPDPTRDPERDQLP*RTKSL--RNTD--VEGRG 202
++GG +G R+ + GRR P TR P + +P R ++ R D VE R
Sbjct: 261 RQGGGGSSGQGRRRPWQGARGRRGEAPAPAATRAPVEEAVPQRAEAAPQRAEDDVVEVRR 320
Query: 203 NPPQLHPKRVIDRETFKLFQGHDHDP 280
+ P+ P + G D DP
Sbjct: 321 DHPRCRPDLADAVPSSSTAAGDDDDP 346
>07_03_0588 -
19715677-19715754,19715843-19715942,19716170-19716297,
19716385-19716552,19716623-19716735,19716820-19716972,
19717082-19717225,19718710-19719427
Length = 533
Score = 28.7 bits (61), Expect = 3.3
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = +2
Query: 23 SPDEKRGGLSRAGHSYRKTSTPSTGRREITQPPDP 127
SPD RGG + G+S++ +T QPP P
Sbjct: 10 SPDSGRGGANGYGYSHQTKPAQTTPSYNHPQPPPP 44
>05_03_0458 + 14280953-14281866,14281964-14282912
Length = 620
Score = 28.3 bits (60), Expect = 4.3
Identities = 19/58 (32%), Positives = 21/58 (36%), Gaps = 2/58 (3%)
Frame = +2
Query: 56 AGHSYRKTSTPSTGRREITQPPDPTRDPERDQLP*RTKSLRNTD--VEGRGNPPQLHP 223
A SY TS PS+ R PP P P SL T +PP L P
Sbjct: 13 ASSSYGPTSPPSSCRNAAPSPPSSNSTPTSSTTPTVPPSLTTTSSPSSSPSSPPPLPP 70
>08_02_1369 -
26445725-26445812,26446443-26446529,26446720-26446928,
26447501-26447583,26447672-26447720,26447800-26447959,
26448795-26448891,26449424-26449535,26449637-26449702,
26450135-26450206,26450413-26450487,26451139-26451266,
26451551-26451772,26452084-26452355,26452447-26452543,
26452633-26452738,26454834-26455220
Length = 769
Score = 27.9 bits (59), Expect = 5.7
Identities = 14/44 (31%), Positives = 19/44 (43%)
Frame = +2
Query: 8 PLPVPSPDEKRGGLSRAGHSYRKTSTPSTGRREITQPPDPTRDP 139
PLP P P + A + T+TP+T PP+P P
Sbjct: 18 PLPPPLPAPFHSPSTPAAATATATATPATATATPATPPNPPAPP 61
>01_06_0752 + 31704071-31704787
Length = 238
Score = 27.9 bits (59), Expect = 5.7
Identities = 14/36 (38%), Positives = 19/36 (52%)
Frame = -2
Query: 152 TGPAPGLWLDPGAGLFPAAQCSALTFYGRNVQLYST 45
T PG DPG+ F + S+ GRNV+L +T
Sbjct: 4 TSAVPGRVSDPGSAWFGGGERSSSAGPGRNVRLIAT 39
>01_05_0499 - 22750794-22751237,22751337-22751456
Length = 187
Score = 27.5 bits (58), Expect = 7.5
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = -3
Query: 103 PPPSARR*RFTVGMSSSTQPSSFLIRAWDRQW 8
PPP ARR RF V + + + W +QW
Sbjct: 21 PPPFARRRRFKVTAMAPQKKVNRYDEKWSKQW 52
>10_08_0466 + 18141369-18141432,18141628-18141711,18142603-18142793
Length = 112
Score = 27.1 bits (57), Expect = 10.0
Identities = 15/34 (44%), Positives = 17/34 (50%)
Frame = +3
Query: 111 PSPRIQPETRSGTSCREGLNPFEILMWKDVGTHH 212
P+PR P SGT C EG NP +L G H
Sbjct: 30 PAPR--PNGSSGTRCYEGCNPPGLLRPASSGGGH 61
>07_03_0327 +
16817149-16817438,16818029-16818224,16818309-16819642,
16819925-16820097,16820257-16820503,16820599-16820893,
16820934-16820982,16821357-16821562
Length = 929
Score = 27.1 bits (57), Expect = 10.0
Identities = 16/45 (35%), Positives = 18/45 (40%)
Frame = +2
Query: 11 LPVPSPDEKRGGLSRAGHSYRKTSTPSTGRREITQPPDPTRDPER 145
LP PSP G G S + P GR + PP T P R
Sbjct: 43 LPSPSPTLALPGGGDEGASTEIIAAPWPGRHGLFTPPRSTSQPAR 87
>03_05_0640 -
26326832-26327166,26327295-26327529,26327665-26327908,
26328389-26328507,26328860-26329050,26329133-26329220,
26331653-26331715,26331816-26333944,26334084-26334186
Length = 1168
Score = 27.1 bits (57), Expect = 10.0
Identities = 18/51 (35%), Positives = 23/51 (45%)
Frame = +2
Query: 26 PDEKRGGLSRAGHSYRKTSTPSTGRREITQPPDPTRDPERDQLP*RTKSLR 178
P E G RA + +T S R T P+PT ER + P + SLR
Sbjct: 292 PLEPASGSPRARVLTPEPATRSPRARVQTPEPEPTASSERARRPRKRSSLR 342
>03_05_0415 -
24019330-24019539,24020948-24021099,24021765-24021846,
24021930-24022068,24022775-24023127
Length = 311
Score = 27.1 bits (57), Expect = 10.0
Identities = 15/44 (34%), Positives = 19/44 (43%)
Frame = +2
Query: 8 PLPVPSPDEKRGGLSRAGHSYRKTSTPSTGRREITQPPDPTRDP 139
PLP+P RGG R YR+ + + T P PT P
Sbjct: 34 PLPLP-----RGGHLRCSAGYREAAAAAASTSSTTTTPRPTEIP 72
>01_06_0740 + 31603996-31604820,31605080-31605391
Length = 378
Score = 27.1 bits (57), Expect = 10.0
Identities = 16/47 (34%), Positives = 20/47 (42%)
Frame = -2
Query: 221 DVIVVGSHVLPHQYFEGI*SFTATGPAPGLWLDPGAGLFPAAQCSAL 81
DV++ G H Q F GI S G G A FP +C+ L
Sbjct: 193 DVLLHGHHHGGAQLFRGITSLVDVGGGSGGAARASAAAFPHVRCTVL 239
>01_06_0734 +
31569017-31569358,31569832-31569906,31570009-31570159,
31570716-31570784,31570864-31571036,31571474-31571611,
31571747-31571872,31571951-31572049,31573175-31573298,
31573465-31573528,31573798-31573852,31573951-31574075,
31574228-31574301,31574436-31574485,31574722-31574808,
31574897-31574947,31575025-31575108,31575400-31575498
Length = 661
Score = 27.1 bits (57), Expect = 10.0
Identities = 14/39 (35%), Positives = 20/39 (51%)
Frame = +2
Query: 128 TRDPERDQLP*RTKSLRNTDVEGRGNPPQLHPKRVIDRE 244
+RD + D P RTK L N G+ +L P R++ E
Sbjct: 595 SRDSDLDINPVRTKELTNIRAPGKDENVRLSPPRLMSLE 633
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,082,351
Number of Sequences: 37544
Number of extensions: 463748
Number of successful extensions: 1352
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 1311
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1352
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1245816180
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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