Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc20d02
(552 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
L13200-3|AAA28192.1| 304|Caenorhabditis elegans C.elegans chrom... 29 2.9
AF003134-6|AAB54146.3| 827|Caenorhabditis elegans Hypothetical ... 29 2.9
Z81462-7|CAB03845.1| 1008|Caenorhabditis elegans Hypothetical pr... 28 3.9
Z81457-12|CAB03819.1| 1008|Caenorhabditis elegans Hypothetical p... 28 3.9
Z22177-6|CAA80147.1| 141|Caenorhabditis elegans Hypothetical pr... 28 3.9
AF286900-1|AAG01333.1| 1008|Caenorhabditis elegans sex determini... 28 3.9
AF039052-9|AAF98625.1| 302|Caenorhabditis elegans Hypothetical ... 28 3.9
AF099927-3|AAZ32795.1| 893|Caenorhabditis elegans Hypothetical ... 28 5.1
AF099927-1|AAZ32794.1| 955|Caenorhabditis elegans Hypothetical ... 28 5.1
Z81497-4|CAB04079.2| 458|Caenorhabditis elegans Hypothetical pr... 27 6.8
U23515-13|AAK21453.1| 823|Caenorhabditis elegans Hypothetical p... 27 6.8
AC024762-7|AAL32237.1| 83|Caenorhabditis elegans Hypothetical ... 27 6.8
Z47808-4|CAA87772.1| 235|Caenorhabditis elegans Hypothetical pr... 27 9.0
AF068719-7|AAO21425.1| 399|Caenorhabditis elegans Uncoordinated... 27 9.0
AF068719-6|AAV58864.1| 457|Caenorhabditis elegans Uncoordinated... 27 9.0
AF068719-5|AAC17781.1| 458|Caenorhabditis elegans Uncoordinated... 27 9.0
>L13200-3|AAA28192.1| 304|Caenorhabditis elegans C.elegans
chromodomain proteinprotein 1 protein.
Length = 304
Score = 28.7 bits (61), Expect = 2.9
Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
Frame = +2
Query: 35 KRGGLSRAGHSYRKTS--TPSTGRREITQPPDPTRDPERDQL 154
K+G S+A S K S TP+ G + +PP P+R +L
Sbjct: 76 KKGASSKASASVSKASASTPARGAKAAPKPPPKKSPPKRQRL 117
>AF003134-6|AAB54146.3| 827|Caenorhabditis elegans Hypothetical
protein ZC581.9 protein.
Length = 827
Score = 28.7 bits (61), Expect = 2.9
Identities = 13/43 (30%), Positives = 24/43 (55%)
Frame = +2
Query: 53 RAGHSYRKTSTPSTGRREITQPPDPTRDPERDQLP*RTKSLRN 181
R ++++ + ++ RR T+ P+ DP+R+Q P R S N
Sbjct: 767 RNSMNFKQRNARASERRARTRSPNAELDPQREQPPARPNSFTN 809
>Z81462-7|CAB03845.1| 1008|Caenorhabditis elegans Hypothetical
protein C04H5.6 protein.
Length = 1008
Score = 28.3 bits (60), Expect = 3.9
Identities = 12/31 (38%), Positives = 14/31 (45%)
Frame = -1
Query: 228 LLGCNCGGFPRPSTSVFRRDLVLHGNWSRSG 136
+L CN F RP V D G WS +G
Sbjct: 812 MLSCNAAVFYRPKAQVIHADSARKGFWSPAG 842
>Z81457-12|CAB03819.1| 1008|Caenorhabditis elegans Hypothetical
protein C04H5.6 protein.
Length = 1008
Score = 28.3 bits (60), Expect = 3.9
Identities = 12/31 (38%), Positives = 14/31 (45%)
Frame = -1
Query: 228 LLGCNCGGFPRPSTSVFRRDLVLHGNWSRSG 136
+L CN F RP V D G WS +G
Sbjct: 812 MLSCNAAVFYRPKAQVIHADSARKGFWSPAG 842
>Z22177-6|CAA80147.1| 141|Caenorhabditis elegans Hypothetical
protein ZK512.7 protein.
Length = 141
Score = 28.3 bits (60), Expect = 3.9
Identities = 11/37 (29%), Positives = 18/37 (48%)
Frame = -1
Query: 198 RPSTSVFRRDLVLHGNWSRSGSLVGSGGWVISRRPVL 88
RP+ F D V+ +W + V W ++RRP +
Sbjct: 89 RPARITFTGDGVITDSWQGTSDAVEMESWTLNRRPTI 125
>AF286900-1|AAG01333.1| 1008|Caenorhabditis elegans sex determining
protein MOG-4 protein.
Length = 1008
Score = 28.3 bits (60), Expect = 3.9
Identities = 12/31 (38%), Positives = 14/31 (45%)
Frame = -1
Query: 228 LLGCNCGGFPRPSTSVFRRDLVLHGNWSRSG 136
+L CN F RP V D G WS +G
Sbjct: 812 MLSCNAAVFYRPKAQVIHADSARKGFWSPAG 842
>AF039052-9|AAF98625.1| 302|Caenorhabditis elegans Hypothetical
protein T22D1.2 protein.
Length = 302
Score = 28.3 bits (60), Expect = 3.9
Identities = 21/67 (31%), Positives = 28/67 (41%), Gaps = 1/67 (1%)
Frame = +2
Query: 14 PVPSPDEKRGGLSRAGHSYRKTSTPSTGRREITQPPDPTRDPERDQLP*RTKSLR-NTDV 190
P P P + LS G++ R+ P G T PP PT +P+ S R
Sbjct: 43 PPPPPTGEPQDLSGEGNASRRPPPPPKGTG--TPPPPPTGEPQDLSAEEGNASRRPPPPP 100
Query: 191 EGRGNPP 211
+G G PP
Sbjct: 101 KGTGTPP 107
Score = 28.3 bits (60), Expect = 3.9
Identities = 15/43 (34%), Positives = 21/43 (48%)
Frame = +2
Query: 14 PVPSPDEKRGGLSRAGHSYRKTSTPSTGRREITQPPDPTRDPE 142
P P P + LS G++ R+ P G T PP PT +P+
Sbjct: 168 PPPPPTGEPQDLSTEGNASRRPPPPPKGTG--TPPPPPTGEPQ 208
Score = 27.5 bits (58), Expect = 6.8
Identities = 18/66 (27%), Positives = 26/66 (39%)
Frame = +2
Query: 14 PVPSPDEKRGGLSRAGHSYRKTSTPSTGRREITQPPDPTRDPERDQLP*RTKSLRNTDVE 193
P P P + LS G++ R+ P G + PP PT +P+ +
Sbjct: 137 PPPPPTGEPQDLSGEGNASRRPPPPPKGTG--SPPPPPTGEPQDLSTEGNASRRPPPPPK 194
Query: 194 GRGNPP 211
G G PP
Sbjct: 195 GTGTPP 200
Score = 27.1 bits (57), Expect = 9.0
Identities = 14/43 (32%), Positives = 21/43 (48%)
Frame = +2
Query: 14 PVPSPDEKRGGLSRAGHSYRKTSTPSTGRREITQPPDPTRDPE 142
P P P + LS G++ R+ P G + PP PT +P+
Sbjct: 230 PTPPPTGEPQDLSGEGNASRRPPPPPKGTG--SPPPPPTGEPQ 270
>AF099927-3|AAZ32795.1| 893|Caenorhabditis elegans Hypothetical
protein T04C4.1b protein.
Length = 893
Score = 27.9 bits (59), Expect = 5.1
Identities = 18/57 (31%), Positives = 28/57 (49%), Gaps = 5/57 (8%)
Frame = -3
Query: 202 PTSFHISISKGFSPSRQLVPLR-----VSGWIRGLGYFPPPSARR*RFTVGMSSSTQ 47
P+S H S+ + FSP ++ R V+ + FP PS+ + R + SSTQ
Sbjct: 281 PSSLHSSLPRAFSPPHKISKARRRQLAVTTSLSETSAFPIPSSLKARSRMSSMSSTQ 337
>AF099927-1|AAZ32794.1| 955|Caenorhabditis elegans Hypothetical
protein T04C4.1a protein.
Length = 955
Score = 27.9 bits (59), Expect = 5.1
Identities = 18/57 (31%), Positives = 28/57 (49%), Gaps = 5/57 (8%)
Frame = -3
Query: 202 PTSFHISISKGFSPSRQLVPLR-----VSGWIRGLGYFPPPSARR*RFTVGMSSSTQ 47
P+S H S+ + FSP ++ R V+ + FP PS+ + R + SSTQ
Sbjct: 342 PSSLHSSLPRAFSPPHKISKARRRQLAVTTSLSETSAFPIPSSLKARSRMSSMSSTQ 398
>Z81497-4|CAB04079.2| 458|Caenorhabditis elegans Hypothetical
protein F10C2.7 protein.
Length = 458
Score = 27.5 bits (58), Expect = 6.8
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = -1
Query: 276 SWSWP*NSLNVSLSMTLLGCNCGGFPRPSTSVFRR 172
SW + + + S+ TL+G NCGGF + T R+
Sbjct: 341 SWKYT-SVIMFSIVYTLMGTNCGGFYKCGTFASRQ 374
>U23515-13|AAK21453.1| 823|Caenorhabditis elegans Hypothetical
protein R144.2a protein.
Length = 823
Score = 27.5 bits (58), Expect = 6.8
Identities = 19/70 (27%), Positives = 30/70 (42%), Gaps = 2/70 (2%)
Frame = +2
Query: 41 GGLSRAGHSYRKTSTPSTGRREITQPPDPTRDPERDQLP*RTKSLRNTDVEG--RGNPPQ 214
G S + KT +P T +E +P +DP LP + S ++ G R + P
Sbjct: 192 GAASASKTVVEKTKSPGTVNKEKQVKKEPKQDPLDKLLPSSSASKTSSSPAGLKRKSAPS 251
Query: 215 LHPKRVIDRE 244
HP I ++
Sbjct: 252 EHPNAPIRKK 261
>AC024762-7|AAL32237.1| 83|Caenorhabditis elegans Hypothetical
protein Y38F2AL.6 protein.
Length = 83
Score = 27.5 bits (58), Expect = 6.8
Identities = 16/49 (32%), Positives = 22/49 (44%), Gaps = 2/49 (4%)
Frame = +3
Query: 78 RQRRALGGGK*PSPRIQPETRSGTSCR--EGLNPFEILMWKDVGTHHNY 218
R+R GK P + GTSC EG FE+ W+ G +N+
Sbjct: 21 RKREPKESGK-RRPNYDQRHKIGTSCPTLEGHADFEVFGWRKAGIFYNF 68
>Z47808-4|CAA87772.1| 235|Caenorhabditis elegans Hypothetical
protein D2013.6 protein.
Length = 235
Score = 27.1 bits (57), Expect = 9.0
Identities = 15/46 (32%), Positives = 18/46 (39%)
Frame = +2
Query: 20 PSPDEKRGGLSRAGHSYRKTSTPSTGRREITQPPDPTRDPERDQLP 157
PSPD+ G + S+ PS PP P PER P
Sbjct: 161 PSPDQGPNGFNPTTDSFPDQPNPSRVFMSSAPPPYPGIGPERGPHP 206
>AF068719-7|AAO21425.1| 399|Caenorhabditis elegans Uncoordinated
protein 23, isoform b protein.
Length = 399
Score = 27.1 bits (57), Expect = 9.0
Identities = 12/31 (38%), Positives = 21/31 (67%)
Frame = +2
Query: 71 RKTSTPSTGRREITQPPDPTRDPERDQLP*R 163
R+T+ PST + ++PP TR+P+ ++P R
Sbjct: 115 RQTTPPST--KASSRPPSRTREPKEPEVPER 143
>AF068719-6|AAV58864.1| 457|Caenorhabditis elegans Uncoordinated
protein 23, isoform c protein.
Length = 457
Score = 27.1 bits (57), Expect = 9.0
Identities = 12/31 (38%), Positives = 21/31 (67%)
Frame = +2
Query: 71 RKTSTPSTGRREITQPPDPTRDPERDQLP*R 163
R+T+ PST + ++PP TR+P+ ++P R
Sbjct: 173 RQTTPPST--KASSRPPSRTREPKEPEVPER 201
>AF068719-5|AAC17781.1| 458|Caenorhabditis elegans Uncoordinated
protein 23, isoform a protein.
Length = 458
Score = 27.1 bits (57), Expect = 9.0
Identities = 12/31 (38%), Positives = 21/31 (67%)
Frame = +2
Query: 71 RKTSTPSTGRREITQPPDPTRDPERDQLP*R 163
R+T+ PST + ++PP TR+P+ ++P R
Sbjct: 174 RQTTPPST--KASSRPPSRTREPKEPEVPER 202
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,361,251
Number of Sequences: 27780
Number of extensions: 345569
Number of successful extensions: 970
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 902
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 968
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1123720628
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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