Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc20d02
         (552 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              26   0.22 
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    24   1.2  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    23   2.7  
DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    22   3.6  
AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.     22   3.6  
AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      22   4.8  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    21   8.3  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    21   8.3  

>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 26.2 bits (55), Expect = 0.22
 Identities = 17/55 (30%), Positives = 24/55 (43%)
 Frame = -1

Query: 237 SMTLLGCNCGGFPRPSTSVFRRDLVLHGNWSRSGSLVGSGGWVISRRPVLGVDVL 73
           S T L  N G F      V   DL L+  WS  G  +G    V++++    V +L
Sbjct: 589 SFTKLPMNAGEFANLQCIVPTGDLPLNIRWSYPGEEMGGSSGVLAKKVADRVSML 643


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 23.8 bits (49), Expect = 1.2
 Identities = 12/40 (30%), Positives = 17/40 (42%), Gaps = 2/40 (5%)
 Frame = -1

Query: 399 TP*HFECHDG--HHASTAYFSLGDFPASINITSSLRRFPH 286
           TP H   H    HH  +   +   +PA+I I  +    PH
Sbjct: 429 TPHHHHSHAATPHHQHSTPLAHSSYPAAIQIGHTPHHHPH 468


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 22.6 bits (46), Expect = 2.7
 Identities = 17/75 (22%), Positives = 29/75 (38%)
 Frame = +2

Query: 2   TLPLPVPSPDEKRGGLSRAGHSYRKTSTPSTGRREITQPPDPTRDPERDQLP*RTKSLRN 181
           T  +   SP   +G L  A  +Y  T  P+T     T      +  ++ Q   + +   +
Sbjct: 754 TTTITARSPQGSQGLLQCATSNYSTTRWPATSVITTTTGARQQQQQQQQQQQQQQQQQSS 813

Query: 182 TDVEGRGNPPQLHPK 226
           +D    GN P   P+
Sbjct: 814 SDYLMVGNSPASSPR 828


>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 22.2 bits (45), Expect = 3.6
 Identities = 8/24 (33%), Positives = 16/24 (66%)
 Frame = -1

Query: 378 HDGHHASTAYFSLGDFPASINITS 307
           +D  ++S  Y ++  FP+++NI S
Sbjct: 371 NDQDYSSQNYLTVHSFPSTLNIPS 394


>AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.
          Length = 388

 Score = 22.2 bits (45), Expect = 3.6
 Identities = 7/22 (31%), Positives = 15/22 (68%)
 Frame = +1

Query: 409 SLDHLMHRNHRREVNSIIYYLF 474
           +L+H + R H  + +++ Y+LF
Sbjct: 205 ALEHTLDRFHNDKYSNVPYFLF 226


>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 21.8 bits (44), Expect = 4.8
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = +1

Query: 385 KVLRSFQTSLDHLMHRN 435
           K+LR  QT  D  +H N
Sbjct: 107 KILRELQTDYDRRLHDN 123


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.0 bits (42), Expect = 8.3
 Identities = 9/22 (40%), Positives = 11/22 (50%)
 Frame = -2

Query: 92  CSALTFYGRNVQLYSTLLFSHP 27
           C A   YGR+ QL   L+   P
Sbjct: 887 CQASNLYGRDQQLVQLLVQEPP 908


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.0 bits (42), Expect = 8.3
 Identities = 9/22 (40%), Positives = 11/22 (50%)
 Frame = -2

Query: 92  CSALTFYGRNVQLYSTLLFSHP 27
           C A   YGR+ QL   L+   P
Sbjct: 883 CQASNLYGRDQQLVQLLVQEPP 904


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 184,123
Number of Sequences: 438
Number of extensions: 4760
Number of successful extensions: 9
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15827139
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)