Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc20c24
         (456 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC4F6.04 |rpl2502|rpl25b, rpl23a-2|60S ribosomal protein L25|S...   169   1e-43
SPBC106.18 |rpl2501|rpl25a|60S ribosomal protein L25|Schizosacch...   161   6e-41
SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit Bgs3|Schizo...    31   0.11 
SPBC29A10.04 |psm1|smc1|mitotic cohesin complex subunit Psm1 |Sc...    27   1.0  
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ...    27   1.8  
SPAC18G6.05c |||translation elongation regulator Gcn1 |Schizosac...    26   3.1  
SPAC17H9.01 |cid16||poly|Schizosaccharomyces pombe|chr 1|||Manual      25   4.2  
SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic...    25   4.2  
SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase Snf22...    25   5.5  
SPAC4A8.08c |vas1||mitochondrial valine-tRNA ligase Vas1|Schizos...    25   7.3  
SPBC1718.07c |zfs1|moc4|transcription factor Zfs1 |Schizosacchar...    25   7.3  
SPAC20H4.01 ||SPAC631.03|U3 snoRNP-associated protein Utp5|Schiz...    24   9.6  
SPAC14C4.09 |agn1||glucan endo-1,3-alpha-glucosidase Agn1|Schizo...    24   9.6  
SPBC26H8.04c |||DEP domain|Schizosaccharomyces pombe|chr 2|||Manual    24   9.6  

>SPBC4F6.04 |rpl2502|rpl25b, rpl23a-2|60S ribosomal protein
           L25|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 141

 Score =  169 bits (412), Expect = 1e-43
 Identities = 82/133 (61%), Positives = 99/133 (74%)
 Frame = +3

Query: 12  AQRKVVKGEHGKRVRKIRNSVHFRRPKTFEPPRHPKYPRKSLPKRNRMDAYNIIKFPLTS 191
           AQ+ V KG H K  RK+R S  FRRPKT E  R PKY RKS+P  +R+D Y II  P+ S
Sbjct: 9   AQKTVQKGIHNKVARKVRTSTTFRRPKTLELARKPKYARKSVPHASRLDEYKIIVNPINS 68

Query: 192 EAAMKKIEDNNTLVFIVHTSANKHHIKAAVKKLYDINVAKVNTLIRPDGKKKAYVRLARD 371
           E+AMKKIED+NTLVF VH  ANK  IK AVKKLY ++  K+NTLIRP+G KKA+V+L+ D
Sbjct: 69  ESAMKKIEDDNTLVFHVHLKANKFTIKNAVKKLYSVDAVKINTLIRPNGTKKAFVKLSAD 128

Query: 372 YDALDVANKIGII 410
            DALDVAN+IG +
Sbjct: 129 ADALDVANRIGFL 141


>SPBC106.18 |rpl2501|rpl25a|60S ribosomal protein
           L25|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 141

 Score =  161 bits (390), Expect = 6e-41
 Identities = 78/133 (58%), Positives = 96/133 (72%)
 Frame = +3

Query: 12  AQRKVVKGEHGKRVRKIRNSVHFRRPKTFEPPRHPKYPRKSLPKRNRMDAYNIIKFPLTS 191
           AQ+ V KG H K  +K+R S  FRRPKT +  R PKY RKS+    R+D Y II  P+ S
Sbjct: 9   AQKTVQKGIHNKVAKKVRTSTTFRRPKTLQLSRKPKYARKSVAHAPRLDEYKIIVNPINS 68

Query: 192 EAAMKKIEDNNTLVFIVHTSANKHHIKAAVKKLYDINVAKVNTLIRPDGKKKAYVRLARD 371
           E+AMKKIED+NTLVF VH  ANK  IK AV+KLY +   K+NTLIRP+G KKA+V+L+ D
Sbjct: 69  ESAMKKIEDDNTLVFHVHLKANKFTIKEAVRKLYSVEPVKINTLIRPNGTKKAFVKLSAD 128

Query: 372 YDALDVANKIGII 410
            DALDVAN+IG +
Sbjct: 129 ADALDVANRIGFL 141


>SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit
           Bgs3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1826

 Score = 30.7 bits (66), Expect = 0.11
 Identities = 12/39 (30%), Positives = 23/39 (58%)
 Frame = -2

Query: 425 IWNSLYDANFVGNVQCVIISSESYVRFLLTIRPDECVDF 309
           +W +++ A FV +   + +S    +RFL  ++P +C DF
Sbjct: 599 LWITVFIAKFVESYYFLTLSVRDPIRFLQRMKPYDCYDF 637


>SPBC29A10.04 |psm1|smc1|mitotic cohesin complex subunit Psm1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1233

 Score = 27.5 bits (58), Expect = 1.0
 Identities = 20/83 (24%), Positives = 38/83 (45%)
 Frame = +1

Query: 175 NSLSRLKQQ*RRLKITTPWSLLFTQVQTSTISRLQSRNSMI*MLLKSTHSSGLMVRRKRT 354
           N L +L+   R +K+T+      T +     S+++S +  +  L   T  + L+ +    
Sbjct: 396 NLLFKLQTLNRNIKVTSQSKDSLTSIVGDLESKIKSLHESVSSL--DTERADLLAKINEK 453

Query: 355 YDSLEIMTHWTLPTKLASYKLFH 423
            +SLE+  H     +L   +LFH
Sbjct: 454 IESLELEKHDQQKKRLTYSELFH 476


>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 3655

 Score = 26.6 bits (56), Expect = 1.8
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = -2

Query: 383 QCVIISSESYVRFLLTIRPDECVDFSNIY 297
           +C+ I  E +  FL  I+P E V F  ++
Sbjct: 518 RCIEIGGEQFSGFLTNIKPFEAVTFQKLF 546


>SPAC18G6.05c |||translation elongation regulator Gcn1
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2670

 Score = 25.8 bits (54), Expect = 3.1
 Identities = 9/51 (17%), Positives = 25/51 (49%)
 Frame = +3

Query: 153  MDAYNIIKFPLTSEAAMKKIEDNNTLVFIVHTSANKHHIKAAVKKLYDINV 305
            + A+++ +F    E  ++  +DN T   I H  + ++ + A     +++ +
Sbjct: 1090 LQAFDLSRFEFIKEIFLELYDDNETNASIAHQISTQNGLDATETSFFELQI 1140


>SPAC17H9.01 |cid16||poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1202

 Score = 25.4 bits (53), Expect = 4.2
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = -2

Query: 419 NSLYDANFVGNVQCVIISSESYVRFLLTIRPD 324
           ++   +NF  NV C I   +S   F   IRPD
Sbjct: 866 HTFISSNFFENVPCYISLEQSLQNFQNDIRPD 897


>SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic
           subunit Bgs1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1729

 Score = 25.4 bits (53), Expect = 4.2
 Identities = 12/44 (27%), Positives = 24/44 (54%)
 Frame = -2

Query: 440 FYS*KIWNSLYDANFVGNVQCVIISSESYVRFLLTIRPDECVDF 309
           F S  +W ++  A F+ +   + ++    +RFL  +RP +C D+
Sbjct: 503 FVSWCLWITVLVAKFLESYFFLTLNLADSIRFLGAMRPYDCRDY 546


>SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase
            Snf22|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1680

 Score = 25.0 bits (52), Expect = 5.5
 Identities = 16/72 (22%), Positives = 35/72 (48%), Gaps = 5/72 (6%)
 Frame = +3

Query: 27   VKGEHGKRVRKIRNSVHFRRP-----KTFEPPRHPKYPRKSLPKRNRMDAYNIIKFPLTS 191
            ++ ++ +R R+ RNS+ +         T + P     PRK    R + ++ + +  PL+ 
Sbjct: 1439 LEDQYLERKRRRRNSISYTELTLDELNTVDDPSSTLMPRKRGRPRKKTNSGSSLSTPLSQ 1498

Query: 192  EAAMKKIEDNNT 227
            E+++ +    NT
Sbjct: 1499 ESSLARSGRKNT 1510


>SPAC4A8.08c |vas1||mitochondrial valine-tRNA ligase
           Vas1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 950

 Score = 24.6 bits (51), Expect = 7.3
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = +3

Query: 60  IRNSVHFRRPKTFEPPRHP 116
           IR  +H+ +PK+ E P  P
Sbjct: 43  IRKHIHYPKPKSIEAPMFP 61


>SPBC1718.07c |zfs1|moc4|transcription factor Zfs1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 404

 Score = 24.6 bits (51), Expect = 7.3
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = +3

Query: 99  EPPRHPKY 122
           EPPRHPKY
Sbjct: 358 EPPRHPKY 365


>SPAC20H4.01 ||SPAC631.03|U3 snoRNP-associated protein
           Utp5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 666

 Score = 24.2 bits (50), Expect = 9.6
 Identities = 15/54 (27%), Positives = 26/54 (48%)
 Frame = +1

Query: 133 LCLREIAWMPTTSLNSLSRLKQQ*RRLKITTPWSLLFTQVQTSTISRLQSRNSM 294
           + L  IA+  T SL  +   K+  R +  T PW +L +Q     I  ++S+  +
Sbjct: 335 IVLESIAFESTDSLTVV--WKESTRTVFETVPWRILSSQATNGLIELVRSKTRL 386


>SPAC14C4.09 |agn1||glucan endo-1,3-alpha-glucosidase
           Agn1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 424

 Score = 24.2 bits (50), Expect = 9.6
 Identities = 9/25 (36%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
 Frame = -2

Query: 422 WNSLYDANFVGNVQCVI-ISSESYV 351
           WN   +++++GN+Q  +   SE YV
Sbjct: 257 WNDYGESHYIGNIQGALPAGSEGYV 281


>SPBC26H8.04c |||DEP domain|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1496

 Score = 24.2 bits (50), Expect = 9.6
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = +3

Query: 81  RRPKTFEPPRHPKYPRKSLPK 143
           ++P TF  P  P+Y +  +PK
Sbjct: 728 KKPPTFLKPNSPEYAKTVIPK 748


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,881,305
Number of Sequences: 5004
Number of extensions: 36365
Number of successful extensions: 114
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 111
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 114
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 170285640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)