Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc20c24
(456 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_0407 - 24983491-24983575,24983655-24984015,24984367-249844... 190 6e-49
01_03_0217 + 13879259-13879270,13880322-13880683,13880771-13880855 187 3e-48
07_01_0566 + 4207894-4207974,4208090-4208144,4208671-4208759,420... 31 0.44
08_02_0094 + 12277756-12278574,12280314-12280418,12280487-122805... 29 1.8
02_02_0187 + 7611922-7614099,7614692-7614795,7614828-7614996 27 7.2
11_04_0331 + 16456577-16456579,16456664-16456911,16457625-164578... 27 9.5
02_02_0199 - 7710487-7710804,7710907-7711298,7711543-7711878,771... 27 9.5
>04_04_0407 -
24983491-24983575,24983655-24984015,24984367-24984406,
24984466-24984468
Length = 162
Score = 190 bits (462), Expect = 6e-49
Identities = 93/136 (68%), Positives = 105/136 (77%)
Frame = +3
Query: 3 ALKAQRKVVKGEHGKRVRKIRNSVHFRRPKTFEPPRHPKYPRKSLPKRNRMDAYNIIKFP 182
ALKA + V G K +KIR SV F RPKT + R PKYPR S P RN++D Y I+K+P
Sbjct: 27 ALKAAKAVKSGTAKKTTKKIRTSVTFHRPKTLKKSRDPKYPRVSTPGRNKLDQYQILKYP 86
Query: 183 LTSEAAMKKIEDNNTLVFIVHTSANKHHIKAAVKKLYDINVAKVNTLIRPDGKKKAYVRL 362
LT+E+AMKKIEDNNTLVFIV A+K IKAAVKK+YDI KVNTLIRPDGKKKAYV+L
Sbjct: 87 LTTESAMKKIEDNNTLVFIVDLKADKKKIKAAVKKMYDIQAKKVNTLIRPDGKKKAYVKL 146
Query: 363 ARDYDALDVANKIGII 410
DYDALDVANKIGII
Sbjct: 147 TPDYDALDVANKIGII 162
>01_03_0217 + 13879259-13879270,13880322-13880683,13880771-13880855
Length = 152
Score = 187 bits (456), Expect = 3e-48
Identities = 91/136 (66%), Positives = 105/136 (77%)
Frame = +3
Query: 3 ALKAQRKVVKGEHGKRVRKIRNSVHFRRPKTFEPPRHPKYPRKSLPKRNRMDAYNIIKFP 182
ALK + V G ++ +KIR SV F RPKT + R PKYPR S P RN++D Y I+K+P
Sbjct: 17 ALKVAKAVKSGSIKRKSKKIRTSVTFHRPKTLKKARDPKYPRVSAPGRNKLDQYQILKYP 76
Query: 183 LTSEAAMKKIEDNNTLVFIVHTSANKHHIKAAVKKLYDINVAKVNTLIRPDGKKKAYVRL 362
LT+E+AMKKIEDNNTLVFIV A+K IKAAVKK+YDI KVNTLIRPDGKKKAYV+L
Sbjct: 77 LTTESAMKKIEDNNTLVFIVDLKADKKKIKAAVKKMYDIQAKKVNTLIRPDGKKKAYVKL 136
Query: 363 ARDYDALDVANKIGII 410
DYDALDVANKIGII
Sbjct: 137 TPDYDALDVANKIGII 152
>07_01_0566 +
4207894-4207974,4208090-4208144,4208671-4208759,
4209742-4209794,4209966-4210120,4210201-4210528,
4210618-4210730,4211394-4211538,4211951-4212259,
4212340-4212420,4212989-4213349
Length = 589
Score = 31.1 bits (67), Expect = 0.44
Identities = 18/48 (37%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Frame = +3
Query: 27 VKGEHGKRVRKIR-NSVHFRRPKTFEPPRHPKYPRKSLPKRNRMDAYN 167
+KGE K++R+ NS +R KT +PP H K +K K D+Y+
Sbjct: 140 LKGEKEKKLRRTEDNSAAEKRVKTQKPPTHDKQKKKR--KHYSSDSYS 185
>08_02_0094 +
12277756-12278574,12280314-12280418,12280487-12280543,
12280969-12281041,12281525-12281703,12281788-12281961,
12282041-12282326,12282433-12282509,12282599-12282668,
12282751-12282822,12282920-12283155,12283240-12283374,
12283466-12283761,12284237-12284408,12284510-12284608,
12284704-12284835,12284950-12285050,12285426-12285615,
12285723-12285761
Length = 1103
Score = 29.1 bits (62), Expect = 1.8
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = +3
Query: 228 LVFIVHTSANKHHIKAAVKKLYDINVAKVNTLIRP 332
L+ +H H IK +KK YD + +K +I+P
Sbjct: 300 LILRMHRKEVVHEIKRHLKKSYDFHTSKCTLIIKP 334
>02_02_0187 + 7611922-7614099,7614692-7614795,7614828-7614996
Length = 816
Score = 27.1 bits (57), Expect = 7.2
Identities = 9/13 (69%), Positives = 12/13 (92%)
Frame = -3
Query: 115 GCLGGSNVLGLRK 77
GC GGSN++G+RK
Sbjct: 766 GCAGGSNLIGIRK 778
>11_04_0331 +
16456577-16456579,16456664-16456911,16457625-16457812,
16458293-16458489,16458579-16458768,16458865-16459084,
16459169-16459376,16459508-16459642,16459725-16459916,
16459999-16460171,16460266-16460454,16460539-16460655,
16460734-16460818,16460900-16461052,16461135-16461260,
16461391-16461573,16461823-16461984,16462098-16462214
Length = 961
Score = 26.6 bits (56), Expect = 9.5
Identities = 20/60 (33%), Positives = 26/60 (43%), Gaps = 13/60 (21%)
Frame = +3
Query: 78 FRRPK----TFEPPRHPKYPRK---------SLPKRNRMDAYNIIKFPLTSEAAMKKIED 218
FRRPK F PPR P+ PR S P R++ Y+ P+T + ED
Sbjct: 154 FRRPKRHRANFRPPREPRTPRSDDDGDGATPSSPGRSQRGMYSGGDVPMTDQTDDDPYED 213
>02_02_0199 -
7710487-7710804,7710907-7711298,7711543-7711878,
7711971-7711996,7712466-7712525,7712625-7712696,
7712784-7712927,7714165-7714236,7714350-7714482,
7714572-7714680
Length = 553
Score = 26.6 bits (56), Expect = 9.5
Identities = 13/31 (41%), Positives = 19/31 (61%), Gaps = 2/31 (6%)
Frame = -2
Query: 326 DECVDFSNIYIIEF--LDCSLDMVLVCTCVN 240
D+ VD Y +F L+CS+D++L CT N
Sbjct: 459 DKLVDRDLKYSFDFAELECSVDVILQCTQTN 489
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,743,745
Number of Sequences: 37544
Number of extensions: 220605
Number of successful extensions: 587
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 574
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 586
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 895500300
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -