Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc20c24
(456 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY540846-1|AAS48080.1| 541|Apis mellifera neuronal nicotinic ac... 24 0.90
DQ026031-1|AAY87890.1| 601|Apis mellifera nicotinic acetylcholi... 23 1.6
AF514804-1|AAM51823.1| 537|Apis mellifera neuronal nicotinic ac... 22 2.7
DQ435328-1|ABD92643.1| 143|Apis mellifera OBP11 protein. 22 3.6
DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholi... 21 4.8
DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholi... 21 4.8
DQ026032-1|AAY87891.1| 566|Apis mellifera nicotinic acetylcholi... 21 4.8
DQ026039-1|AAY87898.1| 427|Apis mellifera nicotinic acetylcholi... 21 6.3
AF023666-1|AAC14552.1| 363|Apis mellifera sn-glycerol-3-phospha... 21 6.3
EF540769-1|ABQ14707.1| 620|Apis mellifera adenosine deaminase p... 21 8.4
EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholi... 21 8.4
AB267886-1|BAF46356.1| 567|Apis mellifera ecdysteroid receptor ... 21 8.4
>AY540846-1|AAS48080.1| 541|Apis mellifera neuronal nicotinic
acetylcholine receptorApisa2 subunit protein.
Length = 541
Score = 23.8 bits (49), Expect = 0.90
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = +3
Query: 225 TLVFIVHTSANKHHIKAAVKKLYDINVAKVNTLIRP 332
T++ I+ SA H K+LYD ++ N LIRP
Sbjct: 5 TIILIL--SARICHGNPDAKRLYDDLLSNYNRLIRP 38
>DQ026031-1|AAY87890.1| 601|Apis mellifera nicotinic acetylcholine
receptor alpha1subunit protein.
Length = 601
Score = 23.0 bits (47), Expect = 1.6
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = +3
Query: 282 KKLYDINVAKVNTLIRPDG 338
K+LYD ++ N LIRP G
Sbjct: 22 KRLYDDLLSNYNRLIRPVG 40
>AF514804-1|AAM51823.1| 537|Apis mellifera neuronal nicotinic
acetylcholine receptoralpha-3 protein.
Length = 537
Score = 22.2 bits (45), Expect = 2.7
Identities = 14/38 (36%), Positives = 18/38 (47%), Gaps = 1/38 (2%)
Frame = +3
Query: 222 NTLVFIVHTSANK-HHIKAAVKKLYDINVAKVNTLIRP 332
NTL I + K K+LYD ++ N LIRP
Sbjct: 14 NTLHIIYSVAGLKIFEANPDTKRLYDDLLSNYNRLIRP 51
>DQ435328-1|ABD92643.1| 143|Apis mellifera OBP11 protein.
Length = 143
Score = 21.8 bits (44), Expect = 3.6
Identities = 14/45 (31%), Positives = 20/45 (44%)
Frame = -2
Query: 338 TIRPDECVDFSNIYIIEFLDCSLDMVLVCTCVNNKDQGVVIFNLL 204
TI E ++ E L C + VL V +K G + +NLL
Sbjct: 50 TIEDVEATEYGEFPEDEKLKCYFNCVLEKFNVMDKKNGKIRYNLL 94
>DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 21.4 bits (43), Expect = 4.8
Identities = 8/17 (47%), Positives = 12/17 (70%)
Frame = +3
Query: 282 KKLYDINVAKVNTLIRP 332
K+LYD ++ N L+RP
Sbjct: 30 KRLYDDLLSNYNKLVRP 46
>DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 21.4 bits (43), Expect = 4.8
Identities = 8/17 (47%), Positives = 12/17 (70%)
Frame = +3
Query: 282 KKLYDINVAKVNTLIRP 332
K+LYD ++ N L+RP
Sbjct: 30 KRLYDDLLSNYNKLVRP 46
>DQ026032-1|AAY87891.1| 566|Apis mellifera nicotinic acetylcholine
receptor alpha3subunit protein.
Length = 566
Score = 21.4 bits (43), Expect = 4.8
Identities = 8/17 (47%), Positives = 12/17 (70%)
Frame = +3
Query: 282 KKLYDINVAKVNTLIRP 332
K+LYD ++ N L+RP
Sbjct: 26 KRLYDDLLSNYNKLVRP 42
>DQ026039-1|AAY87898.1| 427|Apis mellifera nicotinic acetylcholine
receptor beta2subunit protein.
Length = 427
Score = 21.0 bits (42), Expect = 6.3
Identities = 13/49 (26%), Positives = 24/49 (48%)
Frame = +3
Query: 183 LTSEAAMKKIEDNNTLVFIVHTSANKHHIKAAVKKLYDINVAKVNTLIR 329
L +E + + +NNT IVH S ++ I + + ++ N L+R
Sbjct: 192 LDTEQILDDMYNNNTEWEIVHMSHSESTIDSKFGLGFTTDLLSYNILLR 240
>AF023666-1|AAC14552.1| 363|Apis mellifera sn-glycerol-3-phosphate
dehydrogenase protein.
Length = 363
Score = 21.0 bits (42), Expect = 6.3
Identities = 10/28 (35%), Positives = 15/28 (53%)
Frame = +3
Query: 270 KAAVKKLYDINVAKVNTLIRPDGKKKAY 353
KAAV +L + + K + P GKK +
Sbjct: 226 KAAVMRLGLMEIIKFVNIFFPGGKKTTF 253
>EF540769-1|ABQ14707.1| 620|Apis mellifera adenosine deaminase
protein.
Length = 620
Score = 20.6 bits (41), Expect = 8.4
Identities = 7/20 (35%), Positives = 13/20 (65%)
Frame = -2
Query: 383 QCVIISSESYVRFLLTIRPD 324
+CV + ESY +F +++ D
Sbjct: 170 KCVSDNGESYAKFTISVTID 189
>EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 3 protein.
Length = 461
Score = 20.6 bits (41), Expect = 8.4
Identities = 7/12 (58%), Positives = 8/12 (66%)
Frame = +1
Query: 127 GSLCLREIAWMP 162
GS C +IAW P
Sbjct: 108 GSTCKIDIAWFP 119
>AB267886-1|BAF46356.1| 567|Apis mellifera ecdysteroid receptor A
isoform protein.
Length = 567
Score = 20.6 bits (41), Expect = 8.4
Identities = 9/19 (47%), Positives = 12/19 (63%)
Frame = +1
Query: 304 LLKSTHSSGLMVRRKRTYD 360
LLK+ S +M+R R YD
Sbjct: 410 LLKACSSEVMMLRMARKYD 428
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 124,843
Number of Sequences: 438
Number of extensions: 2479
Number of successful extensions: 12
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 12066642
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)
- SilkBase 1999-2023 -