Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc20c22
         (150 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC646.17c |dic1|SPBC855.01c, SPBP35G2.01c, mug44|dynein interm...    25   1.8  
SPBC2D10.04 |||arrestin Aly1 related|Schizosaccharomyces pombe|c...    24   3.1  
SPCC320.07c |mde7||RNA-binding protein Mde7|Schizosaccharomyces ...    23   4.1  
SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces...    23   5.5  
SPAC4A8.10 |||lipase |Schizosaccharomyces pombe|chr 1|||Manual         23   7.2  
SPAC1D4.13 |byr1|ste1, ste3|MAP kinase kinase Byr1|Schizosacchar...    23   7.2  
SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-gluca...    23   7.2  
SPBPB10D8.01 |||cysteine transporter |Schizosaccharomyces pombe|...    23   7.2  
SPBP8B7.19 |spt16||FACT complex component Spt16|Schizosaccharomy...    22   9.6  
SPBC21C3.20c |git1||C2 domain protein Git1|Schizosaccharomyces p...    22   9.6  
SPBC725.06c |ppk31|mug25|serine/threonine protein kinase Ppk31 |...    22   9.6  

>SPBC646.17c |dic1|SPBC855.01c, SPBP35G2.01c, mug44|dynein
           intermediate chain Dic1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 544

 Score = 24.6 bits (51), Expect = 1.8
 Identities = 7/21 (33%), Positives = 13/21 (61%)
 Frame = -2

Query: 71  IHTPPPSGVLTCTTINITKTW 9
           I+ PP + ++TC+T  +   W
Sbjct: 300 INNPPSNNIVTCSTDGLVHIW 320


>SPBC2D10.04 |||arrestin Aly1 related|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 658

 Score = 23.8 bits (49), Expect = 3.1
 Identities = 7/23 (30%), Positives = 15/23 (65%)
 Frame = -2

Query: 77  RIIHTPPPSGVLTCTTINITKTW 9
           +++ TP P+ + +   INI++ W
Sbjct: 323 QLVRTPSPASLSSSELINISRDW 345


>SPCC320.07c |mde7||RNA-binding protein Mde7|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 761

 Score = 23.4 bits (48), Expect = 4.1
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = -2

Query: 65  TPPPSGVLTCTTINITKT 12
           TP P+G  + TT+N T+T
Sbjct: 727 TPKPNGTNSVTTLNRTQT 744


>SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 3131

 Score = 23.0 bits (47), Expect = 5.5
 Identities = 8/21 (38%), Positives = 14/21 (66%)
 Frame = +1

Query: 70   IIRHIYRFFYYKTVTKTVKYL 132
            I+ +   F +YK + ++VKYL
Sbjct: 1085 ILNYASNFGHYKAIVQSVKYL 1105


>SPAC4A8.10 |||lipase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 723

 Score = 22.6 bits (46), Expect = 7.2
 Identities = 8/16 (50%), Positives = 9/16 (56%)
 Frame = +3

Query: 15  FCNIYCRTRKYARWWG 62
           F   YC+T K  RW G
Sbjct: 283 FTGNYCQTEKGVRWLG 298


>SPAC1D4.13 |byr1|ste1, ste3|MAP kinase kinase
           Byr1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 340

 Score = 22.6 bits (46), Expect = 7.2
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = +1

Query: 28  IVVHVSTPDGGGV*IIRHIYRFFYYKTV 111
           +V H+   +GG V +++H   F   KTV
Sbjct: 68  VVRHLGEGNGGAVSLVKHRNIFMARKTV 95


>SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-glucan
           synthase Ags1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 2410

 Score = 22.6 bits (46), Expect = 7.2
 Identities = 7/17 (41%), Positives = 12/17 (70%)
 Frame = +3

Query: 12  SFCNIYCRTRKYARWWG 62
           +F N+Y  + +Y R+WG
Sbjct: 222 NFTNVYNTSCEYPRFWG 238


>SPBPB10D8.01 |||cysteine transporter |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 552

 Score = 22.6 bits (46), Expect = 7.2
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = +1

Query: 58  GGV*IIRHIYRFFYYKTVTKTVKYL 132
           GG+     I  FFYY   T T ++L
Sbjct: 254 GGITFFLTIGLFFYYPDNTSTARFL 278


>SPBP8B7.19 |spt16||FACT complex component Spt16|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1019

 Score = 22.2 bits (45), Expect = 9.6
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = -1

Query: 69  SYTPTIGRTYVYD 31
           SY   +GRTY++D
Sbjct: 289 SYCSNVGRTYLFD 301


>SPBC21C3.20c |git1||C2 domain protein Git1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1098

 Score = 22.2 bits (45), Expect = 9.6
 Identities = 8/11 (72%), Positives = 9/11 (81%)
 Frame = -1

Query: 60  PTIGRTYVYDN 28
           PTI +TYVY N
Sbjct: 562 PTITKTYVYSN 572


>SPBC725.06c |ppk31|mug25|serine/threonine protein kinase Ppk31
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1032

 Score = 22.2 bits (45), Expect = 9.6
 Identities = 8/10 (80%), Positives = 8/10 (80%)
 Frame = -2

Query: 71  IHTPPPSGVL 42
           IH PPPSG L
Sbjct: 171 IHVPPPSGKL 180


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 688,854
Number of Sequences: 5004
Number of extensions: 10404
Number of successful extensions: 37
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 37
length of database: 2,362,478
effective HSP length: 30
effective length of database: 2,212,358
effective search space used: 42034802
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)