Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc20c22
         (150 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_01_0047 - 656357-656766,657061-657226,657333-657515,657628-65...    26   4.8  
09_03_0166 + 12956794-12956832,12956936-12956977,12957084-129571...    25   6.3  
03_03_0074 + 14278725-14278934,14279045-14279806                       25   8.4  
03_03_0073 - 14269472-14270233,14270344-14270526                       25   8.4  

>10_01_0047 -
           656357-656766,657061-657226,657333-657515,657628-657849
          Length = 326

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = -1

Query: 54  IGRTYVYDNKYYKNL 10
           I   YV+DN+YY+NL
Sbjct: 243 ITSAYVFDNRYYQNL 257


>09_03_0166 +
           12956794-12956832,12956936-12956977,12957084-12957149,
           12957237-12957350,12957435-12957515,12957613-12957690,
           12958702-12958784,12959645-12959726,12959801-12959901,
           12960016-12960055,12960162-12960221,12960302-12960348,
           12960437-12960575,12960716-12960931,12961010-12961344,
           12961525-12961596,12962449-12962589,12962680-12962716,
           12962837-12963256
          Length = 730

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 13/28 (46%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
 Frame = +1

Query: 28  IVVHVSTPDGGGV*IIRH-IYRFFYYKT 108
           IV  VS   G G+ + R  + RFFYY+T
Sbjct: 562 IVPRVSQTVGAGITVPRRRLLRFFYYRT 589


>03_03_0074 + 14278725-14278934,14279045-14279806
          Length = 323

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 4/40 (10%)
 Frame = -1

Query: 117 FRNSFVIKKPINMPNYSYTPTIGRTYV----YDNKYYKNL 10
           F N    + P N P  S  PT+ +  V    +DN+YYKN+
Sbjct: 220 FANFLKQRCPAN-PTSSNDPTVNQDAVTPNAFDNQYYKNV 258


>03_03_0073 - 14269472-14270233,14270344-14270526
          Length = 314

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 4/40 (10%)
 Frame = -1

Query: 117 FRNSFVIKKPINMPNYSYTPTIGRTYV----YDNKYYKNL 10
           F N    + P N P  S  PT+ +  V    +DN+YYKN+
Sbjct: 211 FANFLKQRCPAN-PTSSNDPTVNQDAVTPNAFDNQYYKNV 249


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,140,316
Number of Sequences: 37544
Number of extensions: 52867
Number of successful extensions: 137
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 136
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 137
length of database: 14,793,348
effective HSP length: 30
effective length of database: 13,667,028
effective search space used: 259673532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)