Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc20c22
         (150 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF067211-12|AAK66018.2|  276|Caenorhabditis elegans Hypothetical...    27   1.8  
Z49910-1|CAA90118.1|  160|Caenorhabditis elegans Hypothetical pr...    26   4.2  
AF304128-1|AAG50241.1|  160|Caenorhabditis elegans NADH ubiquino...    26   4.2  

>AF067211-12|AAK66018.2|  276|Caenorhabditis elegans Hypothetical
           protein B0205.11 protein.
          Length = 276

 Score = 27.1 bits (57), Expect = 1.8
 Identities = 13/37 (35%), Positives = 18/37 (48%)
 Frame = -1

Query: 129 VFYCFRNSFVIKKPINMPNYSYTPTIGRTYVYDNKYY 19
           VF      F+  KPI+ PN+     + R YV  N+ Y
Sbjct: 171 VFVAENTIFLAAKPISGPNFDIEAKLFRFYVVVNQQY 207


>Z49910-1|CAA90118.1|  160|Caenorhabditis elegans Hypothetical
           protein F44G4.2 protein.
          Length = 160

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 13/20 (65%), Positives = 15/20 (75%), Gaps = 1/20 (5%)
 Frame = -1

Query: 93  KPINMPNYSY-TPTIGRTYV 37
           KPI  P+Y Y TPT GRTY+
Sbjct: 75  KPI--PDYFYRTPTTGRTYI 92


>AF304128-1|AAG50241.1|  160|Caenorhabditis elegans NADH ubiquinone
           oxidoreductaseAGGG subunit protein.
          Length = 160

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 13/20 (65%), Positives = 15/20 (75%), Gaps = 1/20 (5%)
 Frame = -1

Query: 93  KPINMPNYSY-TPTIGRTYV 37
           KPI  P+Y Y TPT GRTY+
Sbjct: 75  KPI--PDYFYRTPTTGRTYI 92


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,853,390
Number of Sequences: 27780
Number of extensions: 59147
Number of successful extensions: 185
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 183
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 185
length of database: 12,740,198
effective HSP length: 30
effective length of database: 11,906,798
effective search space used: 226229162
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)