Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc20c21
         (401 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC543.09 |||mitochondrial m-AAA protease|Schizosaccharomyces p...    27   1.4  
SPCC965.13 |||membrane transporter|Schizosaccharomyces pombe|chr...    26   2.5  
SPAC227.17c |||conserved protein |Schizosaccharomyces pombe|chr ...    25   4.4  
SPAC22F3.12c |rgs1||regulator of G-protein signaling Rgs1|Schizo...    25   5.8  

>SPBC543.09 |||mitochondrial m-AAA protease|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 773

 Score = 26.6 bits (56), Expect = 1.4
 Identities = 14/41 (34%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
 Frame = +3

Query: 24  RKLMRIYLNTDTF-SGQLPAYLTHYVNYPHKNLCDQNWKRF 143
           +K+  I LN +T   G L AY+ + V  P+ N+ +  W+ F
Sbjct: 124 KKVFEIALNGNTILGGILVAYILYNVLSPNANMQEITWQDF 164


>SPCC965.13 |||membrane transporter|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 537

 Score = 25.8 bits (54), Expect = 2.5
 Identities = 13/33 (39%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
 Frame = +2

Query: 101 LSTQKFV*PKLEA-VYVMYFFVILIKQHNFLTI 196
           ++T  F+   L A +YV+YFF  LI++H+ L +
Sbjct: 488 MATLAFISLSLVATIYVIYFFGHLIRKHSRLAV 520


>SPAC227.17c |||conserved protein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 121

 Score = 25.0 bits (52), Expect = 4.4
 Identities = 9/24 (37%), Positives = 12/24 (50%)
 Frame = +3

Query: 84  LTHYVNYPHKNLCDQNWKRFMSCI 155
           + HY  Y   N C  N+K F  C+
Sbjct: 53  MNHYYRYGEYNRCKGNFKDFKWCL 76


>SPAC22F3.12c |rgs1||regulator of G-protein signaling
           Rgs1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 481

 Score = 24.6 bits (51), Expect = 5.8
 Identities = 13/33 (39%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
 Frame = +3

Query: 75  PAYLTHYVNYPHKNLCDQNWKRFMS--CIFSLY 167
           P   T++  +  KN CD+N +RF S  C F+ Y
Sbjct: 352 PNLQTYFFEFLKKNFCDEN-QRFYSEVCEFNDY 383


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,148,444
Number of Sequences: 5004
Number of extensions: 18029
Number of successful extensions: 27
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 136158338
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)