Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc20c20
         (554 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC29B5.03c |rpl26||60S ribosomal protein L26|Schizosaccharomyc...   144   8e-36
SPBC27B12.06 |gpi13||pig-O |Schizosaccharomyces pombe|chr 2|||Ma...    29   0.46 
SPBC244.02c |||U3 snoRNP-associated protein Utp6 |Schizosaccharo...    27   1.9  
SPAC22F8.06 |pam1||20S proteasome component beta 6|Schizosacchar...    26   4.3  
SPMIT.06 |||mitochondrial DNA binding endonuclease|Schizosacchar...    26   4.3  
SPBC947.05c |||ferric-chelate reductase |Schizosaccharomyces pom...    26   4.3  
SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces...    25   5.7  
SPCC1259.10 |pgp1||metallopeptidase Pgp1|Schizosaccharomyces pom...    25   9.9  

>SPBC29B5.03c |rpl26||60S ribosomal protein L26|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 126

 Score =  144 bits (349), Expect = 8e-36
 Identities = 66/105 (62%), Positives = 88/105 (83%)
 Frame = +3

Query: 51  MKFNKQVTSSRRKNRKRHFSAPSHIRRVLMSSPLSKELRQKFNVKSMPIRKDDEVQVVRG 230
           MKF++ VTSSRRK RK HF APS +RRVLMS+PLSKELR+++ ++S+P+R+DD++ V+RG
Sbjct: 1   MKFSRDVTSSRRKQRKAHFGAPSSVRRVLMSAPLSKELREQYKIRSLPVRRDDQITVIRG 60

Query: 231 HYKGQQVGKVMQVYRKKFVVYIERIQREKANGATAYVGIHPSKVV 365
             KG++ GK+  VYRKKF++ IER+ REKANGA+A VGI  SKVV
Sbjct: 61  SNKGRE-GKITSVYRKKFLLLIERVTREKANGASAPVGIDASKVV 104



 Score = 77.0 bits (181), Expect = 2e-15
 Identities = 38/65 (58%), Positives = 50/65 (76%)
 Frame = +3

Query: 360 VVRGHYKGQQVGKVMQVYRKKFVVYIERIQREKANGATAYVGIHPSKCVIVKLKMNKDRK 539
           V+RG  KG++ GK+  VYRKKF++ IER+ REKANGA+A VGI  SK VI KL ++KDRK
Sbjct: 57  VIRGSNKGRE-GKITSVYRKKFLLLIERVTREKANGASAPVGIDASKVVITKLHLDKDRK 115

Query: 540 AILDR 554
            ++ R
Sbjct: 116 DLIVR 120


>SPBC27B12.06 |gpi13||pig-O |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 918

 Score = 29.1 bits (62), Expect = 0.46
 Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 3/53 (5%)
 Frame = -1

Query: 338 ICCCTIGLFSLNPLNVYNKLFTIHLHHFA---NLLAFVVSTYNLNFIVFANRH 189
           + C +I LFS  PL+  N+ F I+L  F+    L   ++ST  + F  F  RH
Sbjct: 825 LTCISIPLFSFEPLSKKNR-FLINLFRFSFSFILYNLLISTSTVFFAGFFRRH 876



 Score = 25.4 bits (53), Expect = 5.7
 Identities = 16/41 (39%), Positives = 25/41 (60%)
 Frame = -1

Query: 479 ICCCTIGLFSLNPLNVYNKLFTIHLHHFANLLAFVVSTYNL 357
           + C +I LFS  PL+  N+ F I+L  F+   +F++  YNL
Sbjct: 825 LTCISIPLFSFEPLSKKNR-FLINLFRFS--FSFIL--YNL 860


>SPBC244.02c |||U3 snoRNP-associated protein Utp6
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 488

 Score = 27.1 bits (57), Expect = 1.9
 Identities = 12/29 (41%), Positives = 17/29 (58%), Gaps = 3/29 (10%)
 Frame = -3

Query: 387 VGLCSVHVQPLK---GECRHMLLHHWPFL 310
           +G+C+ H +  K   GE   +LLH W FL
Sbjct: 321 IGICNEHFEHFKNESGEIYGVLLHRWCFL 349


>SPAC22F8.06 |pam1||20S proteasome component beta
           6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 225

 Score = 25.8 bits (54), Expect = 4.3
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +1

Query: 220 LYVDTTKANRLAK*CRCIVKSLLYTLRGF 306
           LY D  +    A+ C C+V++LLY  R F
Sbjct: 78  LYHDNHERKMSAQSCACMVRTLLYGKRFF 106



 Score = 25.8 bits (54), Expect = 4.3
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +1

Query: 361 LYVDTTKANRLAK*CRCIVKSLLYTLRGF 447
           LY D  +    A+ C C+V++LLY  R F
Sbjct: 78  LYHDNHERKMSAQSCACMVRTLLYGKRFF 106


>SPMIT.06 |||mitochondrial DNA binding
           endonuclease|Schizosaccharomyces pombe|chr
           mitochondrial|||Manual
          Length = 807

 Score = 25.8 bits (54), Expect = 4.3
 Identities = 11/25 (44%), Positives = 16/25 (64%), Gaps = 2/25 (8%)
 Frame = +2

Query: 311 RKGQWCNSICRH--SPFKGCTWTLQ 379
           R G+ C+S  R   + FKGCTW ++
Sbjct: 344 RPGRSCHSALRSIFTNFKGCTWWIE 368


>SPBC947.05c |||ferric-chelate reductase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 564

 Score = 25.8 bits (54), Expect = 4.3
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = -3

Query: 375 SVHVQPLKGECRHMLLHHWPFLFESSQCIQQTFYDTP 265
           +V+  P KGE  ++ L HW F+F ++   Q T   +P
Sbjct: 47  NVYQCPSKGERVYLALRHW-FIFLATHKAQMTLILSP 82


>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 3699

 Score = 25.4 bits (53), Expect = 5.7
 Identities = 18/79 (22%), Positives = 32/79 (40%), Gaps = 11/79 (13%)
 Frame = -3

Query: 399  LCQPVGLCSVHVQPLKGECRHMLLHHWPFLFESSQCIQQ----------TFYDTPASLCQ 250
            +C    LC  H   L    + +++  W ++      ++Q          + YDTPA +  
Sbjct: 1810 MCLTTALCKYHSALLNDYRKSVIMSAWNYIKLEDPMVKQAAYATIACFISAYDTPAKIVT 1869

Query: 249  PVGLCSVHV-QPELHRLCE 196
            PV +  +   QPE+    E
Sbjct: 1870 PVYVSILKTYQPEVRAFIE 1888



 Score = 24.6 bits (51), Expect = 9.9
 Identities = 8/40 (20%), Positives = 20/40 (50%)
 Frame = +2

Query: 26   CRFGEERQNEVQQAGDFLKKEKQEEAFQCSFTYKASVDVL 145
            C F  ++ +E++  G +L  +    +F C   +   V+++
Sbjct: 3300 CEFHHQKFDEIEVPGQYLLHKDNNNSFSCIERFLPEVELI 3339


>SPCC1259.10 |pgp1||metallopeptidase Pgp1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 412

 Score = 24.6 bits (51), Expect = 9.9
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = +3

Query: 333 AYVGIHPSKVVRGHYKGQQVGKVMQ 407
           AY GIHP+ V+  H K   + KV+Q
Sbjct: 83  AYGGIHPTIVIHEHQK--NLAKVIQ 105


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,371,342
Number of Sequences: 5004
Number of extensions: 52411
Number of successful extensions: 157
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 120
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 156
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 231978230
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)