Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc20c20
         (554 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68315-10|CAD59149.1|  109|Caenorhabditis elegans Hypothetical p...   133   9e-32
Z68315-9|CAA92678.1|  106|Caenorhabditis elegans Hypothetical pr...   133   9e-32
Z68315-8|CAA92674.1|  142|Caenorhabditis elegans Hypothetical pr...   133   9e-32
Z81542-3|CAB04415.1|  308|Caenorhabditis elegans Hypothetical pr...    36   0.020
Z81593-6|CAB04740.2|  367|Caenorhabditis elegans Hypothetical pr...    31   0.42 
AF047662-5|AAC04440.1|  385|Caenorhabditis elegans Hypothetical ...    29   3.0  
Z81075-7|CAI79229.1|  342|Caenorhabditis elegans Hypothetical pr...    28   5.2  
Z81075-3|CAI79228.1|  192|Caenorhabditis elegans Hypothetical pr...    28   5.2  
Z81075-2|CAB03048.1|  368|Caenorhabditis elegans Hypothetical pr...    28   5.2  
AL032645-3|CAI79264.1|  342|Caenorhabditis elegans Hypothetical ...    28   5.2  
Z50741-2|CAA90610.1|  383|Caenorhabditis elegans Hypothetical pr...    27   9.1  
U23513-3|AAB36862.1|  209|Caenorhabditis elegans Hypothetical pr...    27   9.1  

>Z68315-10|CAD59149.1|  109|Caenorhabditis elegans Hypothetical
           protein F28C6.7c protein.
          Length = 109

 Score =  133 bits (321), Expect = 9e-32
 Identities = 61/104 (58%), Positives = 83/104 (79%)
 Frame = +3

Query: 51  MKFNKQVTSSRRKNRKRHFSAPSHIRRVLMSSPLSKELRQKFNVKSMPIRKDDEVQVVRG 230
           MK N  V+S   K+RK HF+APSH RR +MS+PL+KELR K  ++++PIR DDEV V+RG
Sbjct: 1   MKVNPFVSSDSGKSRKAHFNAPSHERRRIMSAPLTKELRTKHGIRAIPIRTDDEVVVMRG 60

Query: 231 HYKGQQVGKVMQVYRKKFVVYIERIQREKANGATAYVGIHPSKV 362
            +KG   G+V++ YRKKFV++I++I REKANG+T ++GIHPSKV
Sbjct: 61  RHKG-NTGRVLRCYRKKFVIHIDKITREKANGSTVHIGIHPSKV 103



 Score = 66.9 bits (156), Expect = 9e-12
 Identities = 28/47 (59%), Positives = 40/47 (85%)
 Frame = +3

Query: 360 VVRGHYKGQQVGKVMQVYRKKFVVYIERIQREKANGATAYVGIHPSK 500
           V+RG +KG   G+V++ YRKKFV++I++I REKANG+T ++GIHPSK
Sbjct: 57  VMRGRHKGN-TGRVLRCYRKKFVIHIDKITREKANGSTVHIGIHPSK 102


>Z68315-9|CAA92678.1|  106|Caenorhabditis elegans Hypothetical
           protein F28C6.7b protein.
          Length = 106

 Score =  133 bits (321), Expect = 9e-32
 Identities = 61/104 (58%), Positives = 83/104 (79%)
 Frame = +3

Query: 51  MKFNKQVTSSRRKNRKRHFSAPSHIRRVLMSSPLSKELRQKFNVKSMPIRKDDEVQVVRG 230
           MK N  V+S   K+RK HF+APSH RR +MS+PL+KELR K  ++++PIR DDEV V+RG
Sbjct: 1   MKVNPFVSSDSGKSRKAHFNAPSHERRRIMSAPLTKELRTKHGIRAIPIRTDDEVVVMRG 60

Query: 231 HYKGQQVGKVMQVYRKKFVVYIERIQREKANGATAYVGIHPSKV 362
            +KG   G+V++ YRKKFV++I++I REKANG+T ++GIHPSKV
Sbjct: 61  RHKG-NTGRVLRCYRKKFVIHIDKITREKANGSTVHIGIHPSKV 103



 Score = 66.9 bits (156), Expect = 9e-12
 Identities = 28/47 (59%), Positives = 40/47 (85%)
 Frame = +3

Query: 360 VVRGHYKGQQVGKVMQVYRKKFVVYIERIQREKANGATAYVGIHPSK 500
           V+RG +KG   G+V++ YRKKFV++I++I REKANG+T ++GIHPSK
Sbjct: 57  VMRGRHKGN-TGRVLRCYRKKFVIHIDKITREKANGSTVHIGIHPSK 102


>Z68315-8|CAA92674.1|  142|Caenorhabditis elegans Hypothetical
           protein F28C6.7a protein.
          Length = 142

 Score =  133 bits (321), Expect = 9e-32
 Identities = 61/104 (58%), Positives = 83/104 (79%)
 Frame = +3

Query: 51  MKFNKQVTSSRRKNRKRHFSAPSHIRRVLMSSPLSKELRQKFNVKSMPIRKDDEVQVVRG 230
           MK N  V+S   K+RK HF+APSH RR +MS+PL+KELR K  ++++PIR DDEV V+RG
Sbjct: 1   MKVNPFVSSDSGKSRKAHFNAPSHERRRIMSAPLTKELRTKHGIRAIPIRTDDEVVVMRG 60

Query: 231 HYKGQQVGKVMQVYRKKFVVYIERIQREKANGATAYVGIHPSKV 362
            +KG   G+V++ YRKKFV++I++I REKANG+T ++GIHPSKV
Sbjct: 61  RHKG-NTGRVLRCYRKKFVIHIDKITREKANGSTVHIGIHPSKV 103



 Score = 87.8 bits (208), Expect = 5e-18
 Identities = 37/65 (56%), Positives = 55/65 (84%)
 Frame = +3

Query: 360 VVRGHYKGQQVGKVMQVYRKKFVVYIERIQREKANGATAYVGIHPSKCVIVKLKMNKDRK 539
           V+RG +KG   G+V++ YRKKFV++I++I REKANG+T ++GIHPSK  I KLK++KDR+
Sbjct: 57  VMRGRHKGN-TGRVLRCYRKKFVIHIDKITREKANGSTVHIGIHPSKVAITKLKLDKDRR 115

Query: 540 AILDR 554
           A+++R
Sbjct: 116 ALVER 120


>Z81542-3|CAB04415.1|  308|Caenorhabditis elegans Hypothetical
           protein F49A5.4 protein.
          Length = 308

 Score = 35.9 bits (79), Expect = 0.020
 Identities = 24/80 (30%), Positives = 35/80 (43%), Gaps = 10/80 (12%)
 Frame = +2

Query: 299 EDSKRKGQWCNSIC-RHSPFKGCTWTLQRPT---------GWQSDAGVS*KVCCIH*EDS 448
           +D K +  W   IC RH P   CTW LQ  T         GW S+     K+C     + 
Sbjct: 105 KDQKVENLWAGLICDRHGP-AWCTWDLQSGTTAVYNNFADGWPSNED---KICNYFMTNG 160

Query: 449 KRKGQWCNSICRHSPFKVCD 508
            + G+W ++ C  +   VC+
Sbjct: 161 TQAGKWASASCTETMSFVCE 180


>Z81593-6|CAB04740.2|  367|Caenorhabditis elegans Hypothetical
           protein T20B3.12 protein.
          Length = 367

 Score = 31.5 bits (68), Expect = 0.42
 Identities = 20/77 (25%), Positives = 35/77 (45%), Gaps = 7/77 (9%)
 Frame = +2

Query: 299 EDSKRKGQWCNSICRHSPFKGCTWTLQRPT--GWQSDA-----GVS*KVCCIH*EDSKRK 457
           +D + K  W   IC ++    CTW +Q  T   + + A     GV+ + C  +     + 
Sbjct: 163 KDQQVKNLWTGLICDNNDPSLCTWDVQSGTTAAYNNFAKGYPSGVN-EECIYYMTTGTQA 221

Query: 458 GQWCNSICRHSPFKVCD 508
           GQW + +C  +   VC+
Sbjct: 222 GQWASGLCNETMSFVCE 238


>AF047662-5|AAC04440.1|  385|Caenorhabditis elegans Hypothetical
           protein T22B2.3 protein.
          Length = 385

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 22/88 (25%), Positives = 43/88 (48%), Gaps = 1/88 (1%)
 Frame = +3

Query: 108 SAPSHIRRVLMSSPLSKELRQKFNVKSMPIRK-DDEVQVVRGHYKGQQVGKVMQVYRKKF 284
           + P  I+  L  S   KE  ++  +   P     +EV  ++     + +GKV++V R+K+
Sbjct: 87  TVPIVIQTRLKISEYIKETEKRDGIVQKPYENVHNEVMQIQ-----RDLGKVVKVIREKY 141

Query: 285 VVYIERIQREKANGATAYVGIHPSKVVR 368
           +  I      + +G  A V ++ +KVV+
Sbjct: 142 ISSIPVNDSRQIDGLLANVAVYRNKVVQ 169


>Z81075-7|CAI79229.1|  342|Caenorhabditis elegans Hypothetical
           protein F35C12.3c protein.
          Length = 342

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -3

Query: 462 WPFLFESSQCIQQTFYDTPASLC 394
           W  +F  ++CI  TF + P SLC
Sbjct: 217 WRCMFAQNKCIGTTFQNIPISLC 239



 Score = 27.9 bits (59), Expect = 5.2
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -3

Query: 321 WPFLFESSQCIQQTFYDTPASLC 253
           W  +F  ++CI  TF + P SLC
Sbjct: 217 WRCMFAQNKCIGTTFQNIPISLC 239


>Z81075-3|CAI79228.1|  192|Caenorhabditis elegans Hypothetical
           protein F35C12.3b protein.
          Length = 192

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -3

Query: 462 WPFLFESSQCIQQTFYDTPASLC 394
           W  +F  ++CI  TF + P SLC
Sbjct: 67  WRCMFAQNKCIGTTFQNIPISLC 89



 Score = 27.9 bits (59), Expect = 5.2
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -3

Query: 321 WPFLFESSQCIQQTFYDTPASLC 253
           W  +F  ++CI  TF + P SLC
Sbjct: 67  WRCMFAQNKCIGTTFQNIPISLC 89


>Z81075-2|CAB03048.1|  368|Caenorhabditis elegans Hypothetical
           protein F35C12.3a protein.
          Length = 368

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -3

Query: 462 WPFLFESSQCIQQTFYDTPASLC 394
           W  +F  ++CI  TF + P SLC
Sbjct: 243 WRCMFAQNKCIGTTFQNIPISLC 265



 Score = 27.9 bits (59), Expect = 5.2
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -3

Query: 321 WPFLFESSQCIQQTFYDTPASLC 253
           W  +F  ++CI  TF + P SLC
Sbjct: 243 WRCMFAQNKCIGTTFQNIPISLC 265


>AL032645-3|CAI79264.1|  342|Caenorhabditis elegans Hypothetical
           protein F35C12.3c protein.
          Length = 342

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -3

Query: 462 WPFLFESSQCIQQTFYDTPASLC 394
           W  +F  ++CI  TF + P SLC
Sbjct: 217 WRCMFAQNKCIGTTFQNIPISLC 239



 Score = 27.9 bits (59), Expect = 5.2
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -3

Query: 321 WPFLFESSQCIQQTFYDTPASLC 253
           W  +F  ++CI  TF + P SLC
Sbjct: 217 WRCMFAQNKCIGTTFQNIPISLC 239


>Z50741-2|CAA90610.1|  383|Caenorhabditis elegans Hypothetical
           protein F55G7.2 protein.
          Length = 383

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 17/63 (26%), Positives = 29/63 (46%)
 Frame = +3

Query: 54  KFNKQVTSSRRKNRKRHFSAPSHIRRVLMSSPLSKELRQKFNVKSMPIRKDDEVQVVRGH 233
           KFN+ V   RR N K+    P H  +   +  +++++ +     S+P  K      +  H
Sbjct: 94  KFNEAVALFRRDNPKKQLLLPKHWDQSTCTQQVAQKITEIAKDLSVPYPKK-----LNQH 148

Query: 234 YKG 242
           YKG
Sbjct: 149 YKG 151


>U23513-3|AAB36862.1|  209|Caenorhabditis elegans Hypothetical
           protein D2021.8 protein.
          Length = 209

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 15/37 (40%), Positives = 25/37 (67%), Gaps = 2/37 (5%)
 Frame = -1

Query: 251 NLL--AFVVSTYNLNFIVFANRHGFYIEFLS*FLRQG 147
           NLL  A VV ++NL+ ++ A +HG ++E +   L+QG
Sbjct: 11  NLLKPAVVVDSFNLHAVISATQHG-HVESVEAALKQG 46


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,273,556
Number of Sequences: 27780
Number of extensions: 305560
Number of successful extensions: 917
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 687
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 910
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1134321766
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)