Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc20c19
         (348 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1687.15 |gsk3|skp1|serine/threonine protein kinase Gsk3|Schi...    27   1.1  
SPBC83.04 |apc15||anaphase-promoting complex subunit Apc15 |Schi...    25   2.5  
SPCC576.19c |||dubious|Schizosaccharomyces pombe|chr 3|||Manual        25   2.5  
SPBC1861.03 |mak10||NatC N-acetyltransferase complex subunit Mak...    25   3.4  
SPBC106.14c |sda1||SDA1 family protein|Schizosaccharomyces pombe...    25   3.4  
SPBC19C2.07 |fba1||fructose-bisphosphate aldolase Fba1|Schizosac...    25   4.4  
SPAC22H12.03 |||mitochondrial hydrolase|Schizosaccharomyces pomb...    25   4.4  
SPBC2F12.15c |||palmitoyltransferase|Schizosaccharomyces pombe|c...    25   4.4  
SPCC645.08c |snd1||RNA-binding protein Snd1|Schizosaccharomyces ...    24   5.9  

>SPAC1687.15 |gsk3|skp1|serine/threonine protein kinase
           Gsk3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 387

 Score = 26.6 bits (56), Expect = 1.1
 Identities = 15/62 (24%), Positives = 28/62 (45%)
 Frame = +2

Query: 41  FYIINRDNNGSIYATGKIRNVPLDMQRMSVEDFDRLFEMDKIDGPSEEIKMYMMGTIDGV 220
           +Y    DN+  +Y    +  +P  + R S     RL+   K+  P  E+K+Y+   +  +
Sbjct: 91  YYYTTGDNSDEVYLNLVLEFMPETIYRAS-----RLYTRQKLSMPMLEVKLYIYQLLRSL 145

Query: 221 KY 226
            Y
Sbjct: 146 AY 147


>SPBC83.04 |apc15||anaphase-promoting complex subunit Apc15
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 136

 Score = 25.4 bits (53), Expect = 2.5
 Identities = 11/40 (27%), Positives = 22/40 (55%)
 Frame = +2

Query: 95  RNVPLDMQRMSVEDFDRLFEMDKIDGPSEEIKMYMMGTID 214
           ++  LD + +    F    EMD +DG +EE++ + +  +D
Sbjct: 73  QDTELDEEELGSGSFPEEGEMDDMDGDNEEVEDHDIEEVD 112


>SPCC576.19c |||dubious|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 119

 Score = 25.4 bits (53), Expect = 2.5
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = -3

Query: 346 FFLYIHLLFNNNKYSRFKS*RIGLFG 269
           +FLYI L   NN YS F+S  + L G
Sbjct: 21  WFLYISLELFNNMYSPFRSSSVLLSG 46


>SPBC1861.03 |mak10||NatC N-acetyltransferase complex subunit Mak10
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 708

 Score = 25.0 bits (52), Expect = 3.4
 Identities = 10/16 (62%), Positives = 10/16 (62%)
 Frame = -3

Query: 238 HFFAVLDAVNGAHHVH 191
           HFFAVLD V   H  H
Sbjct: 513 HFFAVLDHVFSIHQTH 528


>SPBC106.14c |sda1||SDA1 family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 719

 Score = 25.0 bits (52), Expect = 3.4
 Identities = 18/60 (30%), Positives = 30/60 (50%)
 Frame = +2

Query: 119 RMSVEDFDRLFEMDKIDGPSEEIKMYMMGTIDGVKYGKEMQMTDMNNKKITEKPYSLAFK 298
           + S++  D   E D+I+GP ++ K      I  V  G+E +    ++KK    P SL+ K
Sbjct: 619 KRSLKRPDDAVEADEIEGPRKKAKNDREARIASVMEGREGR-DKFSSKKAGFNPTSLSNK 677


>SPBC19C2.07 |fba1||fructose-bisphosphate aldolase
           Fba1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 358

 Score = 24.6 bits (51), Expect = 4.4
 Identities = 12/40 (30%), Positives = 20/40 (50%)
 Frame = +2

Query: 194 YMMGTIDGVKYGKEMQMTDMNNKKITEKPYSLAFKPGIFV 313
           Y+ G  D V   K+  MT + N +  +KP    F P +++
Sbjct: 295 YVEGVRDYVLKYKDYLMTPVGNPEGADKPNKKKFDPRVWI 334


>SPAC22H12.03 |||mitochondrial hydrolase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 270

 Score = 24.6 bits (51), Expect = 4.4
 Identities = 13/44 (29%), Positives = 25/44 (56%)
 Frame = +2

Query: 11  TSERDMLIRRFYIINRDNNGSIYATGKIRNVPLDMQRMSVEDFD 142
           T E+D+L+R F + N   + +   T K R VP+++   S++  +
Sbjct: 158 TVEKDILVRSFLLSNLKKDSNNSNTFKFR-VPIELISKSLKTIE 200


>SPBC2F12.15c |||palmitoyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 329

 Score = 24.6 bits (51), Expect = 4.4
 Identities = 12/32 (37%), Positives = 15/32 (46%)
 Frame = -1

Query: 297 LKANE*GFSVIFLLFMSVICISLPYLTPSMVP 202
           +  N  G  ++FL  M V C  L  LTP   P
Sbjct: 44  INKNRVGIIILFLYIMIVTCYVLTNLTPPGSP 75


>SPCC645.08c |snd1||RNA-binding protein Snd1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 878

 Score = 24.2 bits (50), Expect = 5.9
 Identities = 10/14 (71%), Positives = 12/14 (85%)
 Frame = +2

Query: 254 NNKKITEKPYSLAF 295
           N KKITEK +SLA+
Sbjct: 25  NAKKITEKQFSLAY 38


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,311,614
Number of Sequences: 5004
Number of extensions: 24405
Number of successful extensions: 71
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 70
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 71
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 104153322
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)