Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc20c19
         (348 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_05_0034 + 8431753-8431790,8431940-8432063,8432726-8433038,843...    28   2.3  
02_05_0459 + 29217728-29217919,29218095-29218190,29219785-292198...    28   2.3  
10_07_0048 - 12354566-12354639,12355563-12355665,12355781-123559...    27   3.1  
02_02_0140 + 7125914-7126264,7126426-7126677,7126766-7126861,712...    27   5.3  
12_01_0590 - 4813764-4814401,4814785-4814872,4815176-4815376,481...    26   7.1  
02_02_0435 + 10206569-10206730,10207126-10207230,10207897-102079...    26   9.3  

>10_05_0034 +
           8431753-8431790,8431940-8432063,8432726-8433038,
           8433189-8433251,8433778-8434058
          Length = 272

 Score = 27.9 bits (59), Expect = 2.3
 Identities = 14/36 (38%), Positives = 22/36 (61%)
 Frame = +1

Query: 19  TRHVDSSVLHNQPRQQRINLRHRKNQKRSS*YAENE 126
           T HV SS++H    +Q  N+R+ +N+K    YA +E
Sbjct: 23  TAHVTSSIVH----EQSSNIRYGENRKHGQRYAYHE 54


>02_05_0459 +
           29217728-29217919,29218095-29218190,29219785-29219895,
           29219984-29220293,29220745-29220835,29220976-29221285,
           29221469-29221617,29221914-29222418
          Length = 587

 Score = 27.9 bits (59), Expect = 2.3
 Identities = 14/60 (23%), Positives = 31/60 (51%)
 Frame = +2

Query: 71  SIYATGKIRNVPLDMQRMSVEDFDRLFEMDKIDGPSEEIKMYMMGTIDGVKYGKEMQMTD 250
           +I A  + +   L  +  ++ED++R   +++I+G  E+    +  T   ++ G  M +TD
Sbjct: 186 NIQANAEAKGEALTREAKALEDYNRKMLLERINGDKEKWIAAINTTFSHIEGGFRMLLTD 245


>10_07_0048 -
           12354566-12354639,12355563-12355665,12355781-12355933,
           12356105-12356132,12356414-12356450,12356563-12356746
          Length = 192

 Score = 27.5 bits (58), Expect = 3.1
 Identities = 23/74 (31%), Positives = 40/74 (54%)
 Frame = +2

Query: 20  RDMLIRRFYIINRDNNGSIYATGKIRNVPLDMQRMSVEDFDRLFEMDKIDGPSEEIKMYM 199
           R+ L + F II++DNN      GKI +V  D+QR+++E  +  F +D++    E      
Sbjct: 119 REELNKAFKIIDKDNN------GKISDV--DIQRLAIETGEP-FTLDEVREMIEAADENG 169

Query: 200 MGTIDGVKYGKEMQ 241
            G +D  ++ K M+
Sbjct: 170 DGEVDHEEFLKMMK 183


>02_02_0140 +
           7125914-7126264,7126426-7126677,7126766-7126861,
           7127013-7127187,7127283-7127363,7127451-7127548,
           7127828-7127920,7128607-7128678,7128998-7129117,
           7129210-7129260,7130026-7130211,7130355-7130411
          Length = 543

 Score = 26.6 bits (56), Expect = 5.3
 Identities = 11/42 (26%), Positives = 22/42 (52%)
 Frame = +2

Query: 71  SIYATGKIRNVPLDMQRMSVEDFDRLFEMDKIDGPSEEIKMY 196
           +I+   K++ VP     +    F +L  +DK+DG S  ++ +
Sbjct: 440 TIHYETKVKVVPSVEDLLGYSSFQKLLFLDKVDGDSSVLRQH 481


>12_01_0590 -
           4813764-4814401,4814785-4814872,4815176-4815376,
           4816803-4816830,4817136-4817339,4817352-4819136,
           4820358-4821139
          Length = 1241

 Score = 26.2 bits (55), Expect = 7.1
 Identities = 19/84 (22%), Positives = 37/84 (44%), Gaps = 3/84 (3%)
 Frame = +2

Query: 83  TGKIRNVPLDMQRMSVEDFDRLFEMDKIDGPSEEIKMYMMGTIDGVKYGKEMQMTDMNNK 262
           T   R+VP+D + +++  +     +  ID P +E+   +MG   G+K    +    +   
Sbjct: 139 TPNSRHVPVDPRVVAI--YSEAAGLVGIDAPRDELLKLLMGEEQGLKVASIVGFGGVGKT 196

Query: 263 KITEKPY---SLAFKPGIFVIIEQ 325
            + ++ Y      F  G FV + Q
Sbjct: 197 TLAKEVYRKLERKFDCGAFVSVSQ 220


>02_02_0435 +
           10206569-10206730,10207126-10207230,10207897-10207986,
           10208256-10208369,10208477-10208530,10208951-10209067,
           10209530-10209639,10209752-10209825,10209921-10209982,
           10210240-10210435,10210506-10210569,10210789-10210832,
           10210974-10211116,10211521-10211751
          Length = 521

 Score = 25.8 bits (54), Expect = 9.3
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = -3

Query: 211 NGAHHVHFNFFRRSVYFVHFEQSIKI 134
           NG   +HF FFRR   F+  E  + +
Sbjct: 325 NGQKELHFVFFRRPTRFLPSEDGVTV 350


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,848,449
Number of Sequences: 37544
Number of extensions: 137109
Number of successful extensions: 306
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 300
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 305
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 506210712
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)