Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc20c19
         (348 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_23024| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.0  
SB_34768| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   7.3  
SB_28095| Best HMM Match : bZIP_1 (HMM E-Value=0.59)                   26   9.7  
SB_19771| Best HMM Match : DUF1014 (HMM E-Value=1.4)                   26   9.7  

>SB_23024| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 593

 Score = 29.1 bits (62), Expect = 1.0
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = -1

Query: 294 KANE*GFSVIFLLFMSVICISLPYLTPSMVPIM 196
           K N+ GF++  L +   + I L Y TP +VP++
Sbjct: 560 KRNDTGFTLALLPYFVTLYIKLSYATPLVVPVV 592


>SB_34768| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1190

 Score = 26.2 bits (55), Expect = 7.3
 Identities = 18/56 (32%), Positives = 25/56 (44%), Gaps = 2/56 (3%)
 Frame = +2

Query: 116  QRMSVEDFDRLFEMDKIDGPSEEIKMYMMGTIDGVKYGK--EMQMTDMNNKKITEK 277
            Q +  ED++     DK D  SEE    +  T D   Y K  EM + D    +I +K
Sbjct: 961  QSLEDEDYENRERRDKGDEASEENNRPIRSTGDDTSYIKDDEMILEDKARNRIVDK 1016


>SB_28095| Best HMM Match : bZIP_1 (HMM E-Value=0.59)
          Length = 160

 Score = 25.8 bits (54), Expect = 9.7
 Identities = 14/46 (30%), Positives = 25/46 (54%)
 Frame = +2

Query: 110 DMQRMSVEDFDRLFEMDKIDGPSEEIKMYMMGTIDGVKYGKEMQMT 247
           D +R +  D D+   +DK  G  E+++ Y+ G I+     +E Q+T
Sbjct: 24  DNKRAARRDLDQF--IDKQIGALEKMRSYLRGEIESACQKQEKQLT 67


>SB_19771| Best HMM Match : DUF1014 (HMM E-Value=1.4)
          Length = 606

 Score = 25.8 bits (54), Expect = 9.7
 Identities = 21/86 (24%), Positives = 38/86 (44%), Gaps = 1/86 (1%)
 Frame = +2

Query: 8   KTSERDMLIRRFYIINRDNNGSIYATGKIRNVPLDMQRMSVEDFDRLFEMDKIDGPSEEI 187
           + SE+D  IR  ++INR +       GK+        +  +  + RLF   + +   E I
Sbjct: 413 RDSEKDAQIRSNFMINRQSIERFLKPGKVLEEKKCQSKNQMAVYRRLFMDMEREQVRENI 472

Query: 188 KM-YMMGTIDGVKYGKEMQMTDMNNK 262
           +M      +  VK  KE+Q  ++  +
Sbjct: 473 RMKEHRKRMAEVKVEKEIQRLEVERR 498


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,557,132
Number of Sequences: 59808
Number of extensions: 171940
Number of successful extensions: 402
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 394
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 402
length of database: 16,821,457
effective HSP length: 73
effective length of database: 12,455,473
effective search space used: 523129866
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)