Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc20c19
         (348 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

M29458-1|AAA52293.1|  260|Homo sapiens CA3 protein.                    28   9.3  
BC071609-1|AAH71609.1|  270|Homo sapiens chromosome 1 open readi...    28   9.3  
BC015419-1|AAH15419.1|  270|Homo sapiens chromosome 1 open readi...    28   9.3  
BC004897-1|AAH04897.1|  260|Homo sapiens carbonic anhydrase III,...    28   9.3  
AL117350-3|CAI22869.1|  270|Homo sapiens chromosome 1 open readi...    28   9.3  
AL117350-2|CAI22868.1|  156|Homo sapiens chromosome 1 open readi...    28   9.3  
AK123465-1|BAC85619.1|  156|Homo sapiens protein ( Homo sapiens ...    28   9.3  

>M29458-1|AAA52293.1|  260|Homo sapiens CA3 protein.
          Length = 260

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 16/37 (43%), Positives = 21/37 (56%)
 Frame = +2

Query: 206 TIDGVKYGKEMQMTDMNNKKITEKPYSLAFKPGIFVI 316
           T+DGVKY  E+ +   N K  T K  +L  + GI VI
Sbjct: 108 TVDGVKYAAELHLVHWNPKYNTFKE-ALKQRDGIAVI 143


>BC071609-1|AAH71609.1|  270|Homo sapiens chromosome 1 open reading
           frame 96 protein.
          Length = 270

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 15/32 (46%), Positives = 17/32 (53%)
 Frame = +1

Query: 4   EQN*RTRHVDSSVLHNQPRQQRINLRHRKNQK 99
           EQ  RTR  D S    +PRQQ   L  R N+K
Sbjct: 134 EQQTRTRETDKSPTSTEPRQQPSALFARGNRK 165


>BC015419-1|AAH15419.1|  270|Homo sapiens chromosome 1 open reading
           frame 96 protein.
          Length = 270

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 15/32 (46%), Positives = 17/32 (53%)
 Frame = +1

Query: 4   EQN*RTRHVDSSVLHNQPRQQRINLRHRKNQK 99
           EQ  RTR  D S    +PRQQ   L  R N+K
Sbjct: 134 EQQTRTRETDKSPTSTEPRQQPSALFARGNRK 165


>BC004897-1|AAH04897.1|  260|Homo sapiens carbonic anhydrase III,
           muscle specific protein.
          Length = 260

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 16/37 (43%), Positives = 21/37 (56%)
 Frame = +2

Query: 206 TIDGVKYGKEMQMTDMNNKKITEKPYSLAFKPGIFVI 316
           T+DGVKY  E+ +   N K  T K  +L  + GI VI
Sbjct: 108 TVDGVKYAAELHLVHWNPKYNTFKE-ALKQRDGIAVI 143


>AL117350-3|CAI22869.1|  270|Homo sapiens chromosome 1 open reading
           frame 96 protein.
          Length = 270

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 15/32 (46%), Positives = 17/32 (53%)
 Frame = +1

Query: 4   EQN*RTRHVDSSVLHNQPRQQRINLRHRKNQK 99
           EQ  RTR  D S    +PRQQ   L  R N+K
Sbjct: 134 EQQTRTRETDKSPTSTEPRQQPSALFARGNRK 165


>AL117350-2|CAI22868.1|  156|Homo sapiens chromosome 1 open reading
           frame 96 protein.
          Length = 156

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 15/32 (46%), Positives = 17/32 (53%)
 Frame = +1

Query: 4   EQN*RTRHVDSSVLHNQPRQQRINLRHRKNQK 99
           EQ  RTR  D S    +PRQQ   L  R N+K
Sbjct: 20  EQQTRTRETDKSPTSTEPRQQPSALFARGNRK 51


>AK123465-1|BAC85619.1|  156|Homo sapiens protein ( Homo sapiens
           cDNA FLJ41471 fis, clone BRTHA1000311. ).
          Length = 156

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 15/32 (46%), Positives = 17/32 (53%)
 Frame = +1

Query: 4   EQN*RTRHVDSSVLHNQPRQQRINLRHRKNQK 99
           EQ  RTR  D S    +PRQQ   L  R N+K
Sbjct: 20  EQQTRTRETDKSPTSTEPRQQPSALFARGNRK 51


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 43,264,292
Number of Sequences: 237096
Number of extensions: 743807
Number of successful extensions: 1387
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1386
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1387
length of database: 76,859,062
effective HSP length: 80
effective length of database: 57,891,382
effective search space used: 2026198370
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)