Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc20c19
(348 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U32275-1|AAA75370.1| 982|Caenorhabditis elegans serine-threonin... 35 0.014
U11280-5|AAA19437.1| 982|Caenorhabditis elegans Protein kinase ... 35 0.014
Z81546-6|CAB04457.1| 425|Caenorhabditis elegans Hypothetical pr... 28 2.1
Z49908-8|CAA90098.1| 153|Caenorhabditis elegans Hypothetical pr... 27 3.7
Z70034-1|CAA93852.2| 171|Caenorhabditis elegans Hypothetical pr... 27 4.9
U58746-1|AAB00621.2| 558|Caenorhabditis elegans Glutamate trans... 27 4.9
AJ512489-1|CAD54672.1| 171|Caenorhabditis elegans calmodulin-li... 27 4.9
AF003151-21|AAK18914.2| 259|Caenorhabditis elegans Hypothetical... 27 4.9
AF022973-9|AAC25802.2| 1373|Caenorhabditis elegans Hypothetical ... 26 8.5
>U32275-1|AAA75370.1| 982|Caenorhabditis elegans serine-threonine
kinase protein.
Length = 982
Score = 35.1 bits (77), Expect = 0.014
Identities = 17/68 (25%), Positives = 32/68 (47%)
Frame = +2
Query: 95 RNVPLDMQRMSVEDFDRLFEMDKIDGPSEEIKMYMMGTIDGVKYGKEMQMTDMNNKKITE 274
+N LD ++ +ED ++ + K +++K+Y + KY KE Q T + + +
Sbjct: 592 QNNELDKRKKDIEDGEKKMKKTKNSQNQQQMKLYSAQQLKEYKYNKEAQKTRLRSLNMPR 651
Query: 275 KPYSLAFK 298
Y A K
Sbjct: 652 STYENAMK 659
>U11280-5|AAA19437.1| 982|Caenorhabditis elegans Protein kinase
protein 18, isoforma protein.
Length = 982
Score = 35.1 bits (77), Expect = 0.014
Identities = 17/68 (25%), Positives = 32/68 (47%)
Frame = +2
Query: 95 RNVPLDMQRMSVEDFDRLFEMDKIDGPSEEIKMYMMGTIDGVKYGKEMQMTDMNNKKITE 274
+N LD ++ +ED ++ + K +++K+Y + KY KE Q T + + +
Sbjct: 592 QNNELDKRKKDIEDGEKKMKKTKNSQNQQQMKLYSAQQLKEYKYNKEAQKTRLRSLNMPR 651
Query: 275 KPYSLAFK 298
Y A K
Sbjct: 652 STYENAMK 659
>Z81546-6|CAB04457.1| 425|Caenorhabditis elegans Hypothetical
protein F53A2.9 protein.
Length = 425
Score = 27.9 bits (59), Expect = 2.1
Identities = 20/63 (31%), Positives = 30/63 (47%)
Frame = +2
Query: 128 VEDFDRLFEMDKIDGPSEEIKMYMMGTIDGVKYGKEMQMTDMNNKKITEKPYSLAFKPGI 307
+EDF L M+ PS++ M+MM + G++Y TD+ +I EK I
Sbjct: 303 IEDFQYLHLMETTQWPSQQ--MHMMDALSGLRYQIVDLKTDV-KLRILEKQKEFPKPAQI 359
Query: 308 FVI 316
F I
Sbjct: 360 FQI 362
>Z49908-8|CAA90098.1| 153|Caenorhabditis elegans Hypothetical
protein C07E3.9 protein.
Length = 153
Score = 27.1 bits (57), Expect = 3.7
Identities = 14/30 (46%), Positives = 18/30 (60%), Gaps = 2/30 (6%)
Frame = +3
Query: 132 KILIDCSKWTK*TDLRKKLKC--T*WAPLT 215
KI+++C W K KK KC T WAP+T
Sbjct: 121 KIVVEC--WKKFPKPEKKAKCNRTLWAPIT 148
>Z70034-1|CAA93852.2| 171|Caenorhabditis elegans Hypothetical
protein C18E9.1 protein.
Length = 171
Score = 26.6 bits (56), Expect = 4.9
Identities = 17/60 (28%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
Frame = +2
Query: 5 NKTSERDMLIRRFYIINRDNNGSIYATGKIRNVPLDM-QRMSVEDFDRLFEMDKIDGPSE 181
NK ++ +M+ F + +RD NG I A + R M + S ++ D + IDG +
Sbjct: 101 NKENDSEMIREAFRVFDRDGNGFITA-DEFRYFMTHMGDQFSDQEVDEIIAEIDIDGDGQ 159
>U58746-1|AAB00621.2| 558|Caenorhabditis elegans Glutamate
transporter family protein6 protein.
Length = 558
Score = 26.6 bits (56), Expect = 4.9
Identities = 11/33 (33%), Positives = 17/33 (51%)
Frame = -1
Query: 267 IFLLFMSVICISLPYLTPSMVPIMYILISSEGP 169
+ L++ +C L T VP+MY I+ E P
Sbjct: 265 VLALYVFTVCAGLILHTIITVPLMYFFITRENP 297
>AJ512489-1|CAD54672.1| 171|Caenorhabditis elegans calmodulin-like
protein protein.
Length = 171
Score = 26.6 bits (56), Expect = 4.9
Identities = 17/60 (28%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
Frame = +2
Query: 5 NKTSERDMLIRRFYIINRDNNGSIYATGKIRNVPLDM-QRMSVEDFDRLFEMDKIDGPSE 181
NK ++ +M+ F + +RD NG I A + R M + S ++ D + IDG +
Sbjct: 101 NKENDSEMIREAFRVFDRDGNGFITA-DEFRYFMTHMGDQFSDQEVDEIIAEIDIDGDGQ 159
>AF003151-21|AAK18914.2| 259|Caenorhabditis elegans Hypothetical
protein D1007.8 protein.
Length = 259
Score = 26.6 bits (56), Expect = 4.9
Identities = 12/36 (33%), Positives = 22/36 (61%), Gaps = 3/36 (8%)
Frame = +2
Query: 170 GPSEEIKMYMMGTIDGVKYGK---EMQMTDMNNKKI 268
G ++ +++ +MG I+ VK+G E +TD +N I
Sbjct: 30 GTADVVRVQVMGVIESVKFGDSDVEYMITDKDNHNI 65
>AF022973-9|AAC25802.2| 1373|Caenorhabditis elegans Hypothetical
protein F25G6.9 protein.
Length = 1373
Score = 25.8 bits (54), Expect = 8.5
Identities = 15/49 (30%), Positives = 26/49 (53%)
Frame = +2
Query: 131 EDFDRLFEMDKIDGPSEEIKMYMMGTIDGVKYGKEMQMTDMNNKKITEK 277
E ++ E + +D E I+ + G I K K+++ + NNKK+ EK
Sbjct: 916 EKTEKYEETELVD--DESIEKFFNGLISSPK--KDLKEIEQNNKKVLEK 960
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,362,522
Number of Sequences: 27780
Number of extensions: 141213
Number of successful extensions: 397
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 393
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 397
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 461821634
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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