Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc20c19
         (348 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly pro...    26   0.15 
S78458-1|AAB34402.1|   46|Apis mellifera apamin protein.               21   4.2  
S78459-1|AAB34403.1|   50|Apis mellifera mast cell-degranulating...    21   5.5  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                21   5.5  
EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          20   7.3  
EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      20   7.3  
DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase doma...    20   9.6  

>AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly
           protein MRJP5 protein.
          Length = 598

 Score = 25.8 bits (54), Expect = 0.15
 Identities = 15/47 (31%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
 Frame = +2

Query: 113 MQRMSVED-FDRLFEMDKIDGPSEEIKMYMMGTIDGVKYGKEMQMTD 250
           M RM   D  DR+  MD++D      +M+ M T+D +    +M   D
Sbjct: 396 MDRMDTMDTMDRIDRMDRMDRIDRIDRMHTMDTMDTMDRTDKMSSMD 442



 Score = 25.0 bits (52), Expect = 0.26
 Identities = 18/68 (26%), Positives = 31/68 (45%), Gaps = 1/68 (1%)
 Frame = +2

Query: 113 MQRMSVED-FDRLFEMDKIDGPSEEIKMYMMGTIDGVKYGKEMQMTDMNNKKITEKPYSL 289
           M RM   D  DR+  MD+ D  S   +M  +  +D +     M   +  N+++ E   +L
Sbjct: 489 MDRMDRMDRMDRMDTMDRTDKMSRIDRMDKIDRMDRMDRTNRMDRMNRMNRQMNEYMMAL 548

Query: 290 AFKPGIFV 313
           + K   F+
Sbjct: 549 SMKLQKFI 556



 Score = 23.0 bits (47), Expect = 1.0
 Identities = 15/47 (31%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
 Frame = +2

Query: 113 MQRMS-VEDFDRLFEMDKIDGPSEEIKMYMMGTIDGVKYGKEMQMTD 250
           M RM+ V   +R+  MD+ID      +M  M T+D +     M   D
Sbjct: 372 MHRMNRVNRVNRMDRMDRIDRMDRMDRMDTMDTMDRIDRMDRMDRID 418



 Score = 20.2 bits (40), Expect = 7.3
 Identities = 14/50 (28%), Positives = 21/50 (42%)
 Frame = +2

Query: 113 MQRMSVEDFDRLFEMDKIDGPSEEIKMYMMGTIDGVKYGKEMQMTDMNNK 262
           M RM  +  DR+  MD++D      +   M  ID +     M   D  N+
Sbjct: 483 MDRM--DRMDRMDRMDRMDRMDTMDRTDKMSRIDRMDKIDRMDRMDRTNR 530


>S78458-1|AAB34402.1|   46|Apis mellifera apamin protein.
          Length = 46

 Score = 21.0 bits (42), Expect = 4.2
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = -1

Query: 258 LFMSVICISLPYLTPSM 208
           LF+SVI I+  ++TP M
Sbjct: 10  LFLSVILITSYFVTPVM 26


>S78459-1|AAB34403.1|   50|Apis mellifera mast cell-degranulating
           peptide protein.
          Length = 50

 Score = 20.6 bits (41), Expect = 5.5
 Identities = 8/16 (50%), Positives = 13/16 (81%)
 Frame = -1

Query: 255 FMSVICISLPYLTPSM 208
           F+SVI I+  ++TP+M
Sbjct: 11  FLSVILITSYFVTPTM 26


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 20.6 bits (41), Expect = 5.5
 Identities = 9/45 (20%), Positives = 20/45 (44%)
 Frame = -3

Query: 244 HLHFFAVLDAVNGAHHVHFNFFRRSVYFVHFEQSIKIFNAHSLHI 110
           H H    +    G  H H +   +S+  +H+ Q   +  ++S ++
Sbjct: 336 HQHGNHTMGPTMGPPHHHHHHQTQSLQHLHYRQPPTLSESYSSYV 380


>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 20.2 bits (40), Expect = 7.3
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = +2

Query: 122 MSVEDFDRLFEMDKIDGPSEEIKMYMMGTIDGVKYG 229
           M  + F  L  MD+ +  S EI +Y   T+D   +G
Sbjct: 616 MRYKMFFFLSSMDESNTKSYEIPLYGKMTLDDKVFG 651


>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 20.2 bits (40), Expect = 7.3
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = +2

Query: 122 MSVEDFDRLFEMDKIDGPSEEIKMYMMGTIDGVKYG 229
           M  + F  L  MD+ +  S EI +Y   T+D   +G
Sbjct: 616 MRYKMFFFLSSMDESNTKSYEIPLYGKMTLDDKVFG 651


>DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase domain
           protein protein.
          Length = 448

 Score = 19.8 bits (39), Expect = 9.6
 Identities = 7/10 (70%), Positives = 9/10 (90%)
 Frame = +2

Query: 140 DRLFEMDKID 169
           DRL+E+ KID
Sbjct: 268 DRLYELTKID 277


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 90,135
Number of Sequences: 438
Number of extensions: 1679
Number of successful extensions: 12
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  7936320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)