Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc20c19
         (348 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g32605.1 68418.m03879 hypothetical protein                          28   1.5  
At3g02970.1 68416.m00292 phosphate-responsive 1 family protein s...    27   3.4  
At2g37370.1 68415.m04583 hypothetical protein                          27   4.5  
At1g42367.1 68414.m04881 hypothetical protein                          27   4.5  
At4g09430.1 68417.m01553 disease resistance protein (TIR-NBS-LRR...    26   6.0  
At5g32410.2 68418.m03816 hypothetical protein                          26   7.9  

>At5g32605.1 68418.m03879 hypothetical protein
          Length = 365

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 14/37 (37%), Positives = 22/37 (59%)
 Frame = +2

Query: 53  NRDNNGSIYATGKIRNVPLDMQRMSVEDFDRLFEMDK 163
           N D+   I+A+  +R V +D  R  VE  DR+ ++DK
Sbjct: 274 NIDDQSKIWAS--LRRVTMDSSRKYVELLDRILDLDK 308


>At3g02970.1 68416.m00292 phosphate-responsive 1 family protein
           similar to phi-1 (phosphate-induced gene) [Nicotiana
           tabacum] GI:3759184; contains Pfam profile PF04674:
           Phosphate-induced protein 1 conserved region
          Length = 332

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 15/53 (28%), Positives = 28/53 (52%)
 Frame = +2

Query: 116 QRMSVEDFDRLFEMDKIDGPSEEIKMYMMGTIDGVKYGKEMQMTDMNNKKITE 274
           +R  V+D  R  + ++   P  ++K+      + +KYGKE+ M   N +K+ E
Sbjct: 88  ERFEVKDIYRQKKSNRTVAPRIKVKVVRSYVDEKMKYGKELTMG--NGEKLVE 138


>At2g37370.1 68415.m04583 hypothetical protein
          Length = 697

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 14/53 (26%), Positives = 26/53 (49%), Gaps = 2/53 (3%)
 Frame = +2

Query: 125 SVEDFDRLF--EMDKIDGPSEEIKMYMMGTIDGVKYGKEMQMTDMNNKKITEK 277
           +V+D   +F    D++    EE+  Y+ G I G+K   ++   D+    + EK
Sbjct: 187 NVQDLATVFLKYKDEVLAKREELLQYVQGAIGGLKLSADIARIDIEAHTLMEK 239


>At1g42367.1 68414.m04881 hypothetical protein
          Length = 150

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = -3

Query: 247 RHLHFFAVLDAVNGAHHVHFNFFRRSVY 164
           RH HF + LD     HH+H     RS++
Sbjct: 14  RHHHFTSPLDPEVECHHLHHQTLTRSLH 41


>At4g09430.1 68417.m01553 disease resistance protein (TIR-NBS-LRR
           class), putative domain signature TIR-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 1039

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = -3

Query: 250 VRHLHFFAVLDAVNGAHHVH 191
           ++H  FF V+D VN A  VH
Sbjct: 284 LKHKKFFLVIDGVNKAEQVH 303


>At5g32410.2 68418.m03816 hypothetical protein
          Length = 123

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -3

Query: 247 RHLHFFAVLDAVNGAHHVHFNFFRRS 170
           RH HF   LD +   HH++ + F RS
Sbjct: 38  RHHHFSPPLDTLVEYHHLYHSTFTRS 63


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,667,575
Number of Sequences: 28952
Number of extensions: 121254
Number of successful extensions: 269
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 265
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 269
length of database: 12,070,560
effective HSP length: 72
effective length of database: 9,986,016
effective search space used: 429398688
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)