Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc20c17
(220 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC839.08c |its8||pig-N |Schizosaccharomyces pombe|chr 2|||Manual 27 0.34
SPBP16F5.02 |mcs2||cyclin Mcs2|Schizosaccharomyces pombe|chr 2||... 26 0.59
SPAC2C4.14c |ppk11||PAK-related kinase Ppk11|Schizosaccharomyces... 25 1.0
SPAC19A8.04 |erg5||C-22 sterol desaturase Erg5 |Schizosaccharomy... 25 1.4
SPCC1672.03c |||guanine deaminase |Schizosaccharomyces pombe|chr... 24 3.1
SPAPB17E12.04c |csn2||COP9/signalosome complex subunit Csn2 |Sch... 23 4.1
SPACUNK4.10 |||hydroxyacid dehydrogenase |Schizosaccharomyces po... 23 5.5
SPAC2F3.10 |||GARP complex subunit Vps54 |Schizosaccharomyces po... 23 5.5
SPAC1B3.13 |||U3 snoRNP-associated protein Nan1|Schizosaccharomy... 23 5.5
SPAC2F7.03c |pom1||DYRK family protein kinase Pom1|Schizosacchar... 23 7.2
SPCC622.19 |jmj4|mug149|Jmj4 protein|Schizosaccharomyces pombe|c... 23 7.2
SPCC1739.01 ||SPCC1906.05|zf-CCCH type zinc finger protein|Schiz... 23 7.2
SPAC2F7.10 |||palmitoyltransferase |Schizosaccharomyces pombe|ch... 22 9.6
SPBC1105.08 |||EMP70 family|Schizosaccharomyces pombe|chr 2|||Ma... 22 9.6
SPCC16C4.09 |sts5|orb4|RNB-like protein|Schizosaccharomyces pomb... 22 9.6
SPCC417.06c |ppk35|mug27|serine/threonine protein kinase Ppk35|S... 22 9.6
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha... 22 9.6
>SPBC839.08c |its8||pig-N |Schizosaccharomyces pombe|chr 2|||Manual
Length = 935
Score = 27.1 bits (57), Expect = 0.34
Identities = 18/53 (33%), Positives = 27/53 (50%)
Frame = -1
Query: 166 EALAVASKRTELVDSFHFLAVWWFIHILGFD*KMHDFTHTLGVVIVKMCQSLD 8
E LA + + EL D H + +F+H+LG D H+ H V V+ Q +D
Sbjct: 190 ELLAQSLEDKELWDMLHRDKIVFFLHLLGIDTIGHN-KHPDSVEYVENIQYID 241
>SPBP16F5.02 |mcs2||cyclin Mcs2|Schizosaccharomyces pombe|chr
2|||Manual
Length = 322
Score = 26.2 bits (55), Expect = 0.59
Identities = 10/31 (32%), Positives = 19/31 (61%)
Frame = +3
Query: 24 IFTITTPSVWVKSCIF*SNPKMCINHQTAKK 116
I+ + +PS+ I+ +NP +C+ + AKK
Sbjct: 210 IYFLHSPSIIALGAIYHTNPTICLQYIEAKK 240
>SPAC2C4.14c |ppk11||PAK-related kinase Ppk11|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 312
Score = 25.4 bits (53), Expect = 1.0
Identities = 9/27 (33%), Positives = 13/27 (48%)
Frame = +2
Query: 92 YKPPNCQKMKTVDKLCPFAGNCKGLNP 172
+ PP+ ++ K C F NC NP
Sbjct: 217 HSPPSLERSKFSRAFCDFVSNCLKKNP 243
>SPAC19A8.04 |erg5||C-22 sterol desaturase Erg5 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 541
Score = 25.0 bits (52), Expect = 1.4
Identities = 11/44 (25%), Positives = 26/44 (59%)
Frame = -2
Query: 132 LSTVFIFWQFGGLYTSWDLIKRCMTSPTHLES*L*KCVRALIKH 1
LS V +F +F + + DL ++ + SP++++ + + ++KH
Sbjct: 85 LSCVSVFHKFVVIASERDLARKILNSPSYVQPCVVDAGKKILKH 128
>SPCC1672.03c |||guanine deaminase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 527
Score = 23.8 bits (49), Expect = 3.1
Identities = 13/36 (36%), Positives = 17/36 (47%)
Frame = +2
Query: 65 HLLIKSQDVYKPPNCQKMKTVDKLCPFAGNCKGLNP 172
HLL ++Q V PP+C + NCKG P
Sbjct: 478 HLLPRTQCVDTPPSCCGGHCCKEESCRTENCKGAYP 513
>SPAPB17E12.04c |csn2||COP9/signalosome complex subunit Csn2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 437
Score = 23.4 bits (48), Expect = 4.1
Identities = 15/41 (36%), Positives = 17/41 (41%)
Frame = +2
Query: 14 ALTHFYNYDSKCVGEVMHLLIKSQDVYKPPNCQKMKTVDKL 136
ALT FY+ KC GE K+ N Q K D L
Sbjct: 49 ALTSFYSIVEKCEGEQNEWAFKALKQITKINFQLKKYDDML 89
>SPACUNK4.10 |||hydroxyacid dehydrogenase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 334
Score = 23.0 bits (47), Expect = 5.5
Identities = 7/16 (43%), Positives = 10/16 (62%)
Frame = -3
Query: 59 LHPHTWSRNCKNVSEP 12
LH + W+ NCK +P
Sbjct: 139 LHKNNWNANCKPSHDP 154
>SPAC2F3.10 |||GARP complex subunit Vps54 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 949
Score = 23.0 bits (47), Expect = 5.5
Identities = 10/32 (31%), Positives = 18/32 (56%)
Frame = +1
Query: 121 NCRQALSVCWQLQGPQSYL*LLNNKTIINVKK 216
+C Q S+ W + P Y+ L +K++I + K
Sbjct: 840 SCSQIASLSWDIDSPHGYIIDL-SKSLIKLYK 870
>SPAC1B3.13 |||U3 snoRNP-associated protein Nan1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 800
Score = 23.0 bits (47), Expect = 5.5
Identities = 10/29 (34%), Positives = 14/29 (48%)
Frame = -2
Query: 126 TVFIFWQFGGLYTSWDLIKRCMTSPTHLE 40
T FWQF + +W L+ R +LE
Sbjct: 468 TALKFWQFDSVQKTWVLMTRIDNPHGNLE 496
>SPAC2F7.03c |pom1||DYRK family protein kinase
Pom1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1087
Score = 22.6 bits (46), Expect = 7.2
Identities = 12/32 (37%), Positives = 18/32 (56%), Gaps = 5/32 (15%)
Frame = +2
Query: 2 CLIKALTHFYNYDSKCV-----GEVMHLLIKS 82
C+++ HFY D CV G+ ++ LIKS
Sbjct: 760 CMVQYTDHFYFRDHLCVATELLGKNLYELIKS 791
>SPCC622.19 |jmj4|mug149|Jmj4 protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 473
Score = 22.6 bits (46), Expect = 7.2
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = -1
Query: 175 NRIEALAVASKRTELVDSFHFLAVWWFIHILGFD 74
N IEA ++ + EL D F ++V +GFD
Sbjct: 322 NDIEATSLQDTKPELPDHFTKVSVNGLHKFMGFD 355
>SPCC1739.01 ||SPCC1906.05|zf-CCCH type zinc finger
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 547
Score = 22.6 bits (46), Expect = 7.2
Identities = 8/21 (38%), Positives = 12/21 (57%)
Frame = +2
Query: 122 TVDKLCPFAGNCKGLNPICNY 184
T + CPF+ + + PIC Y
Sbjct: 56 TAGENCPFSHSLETERPICKY 76
>SPAC2F7.10 |||palmitoyltransferase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 642
Score = 22.2 bits (45), Expect = 9.6
Identities = 10/31 (32%), Positives = 15/31 (48%), Gaps = 1/31 (3%)
Frame = +2
Query: 74 IKSQDVYKPPNCQK-MKTVDKLCPFAGNCKG 163
+K Y C++ + D CP+ GNC G
Sbjct: 408 VKPPRSYHCGACKRCINRYDHHCPWTGNCVG 438
>SPBC1105.08 |||EMP70 family|Schizosaccharomyces pombe|chr
2|||Manual
Length = 629
Score = 22.2 bits (45), Expect = 9.6
Identities = 11/29 (37%), Positives = 16/29 (55%)
Frame = +2
Query: 98 PPNCQKMKTVDKLCPFAGNCKGLNPICNY 184
PP TV+ + PF G+ +G + I NY
Sbjct: 38 PPGASIDTTVNTISPFIGDGRG-SDIFNY 65
>SPCC16C4.09 |sts5|orb4|RNB-like protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1066
Score = 22.2 bits (45), Expect = 9.6
Identities = 9/20 (45%), Positives = 12/20 (60%)
Frame = +1
Query: 97 TTKLPKNENCRQALSVCWQL 156
T +LP ENCR S+ Q+
Sbjct: 825 TQRLPSRENCRILQSMAIQM 844
>SPCC417.06c |ppk35|mug27|serine/threonine protein kinase
Ppk35|Schizosaccharomyces pombe|chr 3|||Manual
Length = 624
Score = 22.2 bits (45), Expect = 9.6
Identities = 6/13 (46%), Positives = 9/13 (69%)
Frame = -2
Query: 87 SWDLIKRCMTSPT 49
+W I +C+T PT
Sbjct: 438 AWSFITKCLTEPT 450
>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 4196
Score = 22.2 bits (45), Expect = 9.6
Identities = 9/24 (37%), Positives = 14/24 (58%)
Frame = +1
Query: 121 NCRQALSVCWQLQGPQSYL*LLNN 192
NC+ L++ + G +L LLNN
Sbjct: 2910 NCKACLAINESIAGVPGFLDLLNN 2933
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 999,780
Number of Sequences: 5004
Number of extensions: 17594
Number of successful extensions: 48
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 48
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 48
length of database: 2,362,478
effective HSP length: 52
effective length of database: 2,102,270
effective search space used: 42045400
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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