Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc20c17
         (220 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0244 + 1786009-1788048                                           30   0.29 
03_06_0617 - 35124114-35124148,35124243-35124335,35124415-351249...    27   1.6  
10_07_0190 + 13931399-13931600,13931720-13932003,13932158-13933303     25   6.3  
11_02_0006 + 7274148-7274986,7275636-7277586                           25   8.3  

>07_01_0244 + 1786009-1788048
          Length = 679

 Score = 29.9 bits (64), Expect = 0.29
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = -3

Query: 104 LVVYTHLGI*LKDA*LHPHTWSRNCKNVSEP 12
           L+VY H+     D  LH HT+S NC+ +  P
Sbjct: 432 LLVYEHMPNGSLDKYLHEHTYSSNCRTLGWP 462


>03_06_0617 -
           35124114-35124148,35124243-35124335,35124415-35124919,
           35125039-35125238,35125514-35125604,35125699-35126769
          Length = 664

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 10/24 (41%), Positives = 12/24 (50%)
 Frame = +2

Query: 86  DVYKPPNCQKMKTVDKLCPFAGNC 157
           D   PP C   +T+D L  F G C
Sbjct: 152 DTQAPPTCCSARTIDDLADFEGLC 175


>10_07_0190 + 13931399-13931600,13931720-13932003,13932158-13933303
          Length = 543

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 8/21 (38%), Positives = 14/21 (66%)
 Frame = -3

Query: 161 PCSCQQTDRACRQFSFFGSLV 99
           PC+C++   A  Q+ +F S+V
Sbjct: 368 PCNCRECAPAAGQYGYFASMV 388


>11_02_0006 + 7274148-7274986,7275636-7277586
          Length = 929

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 7/32 (21%), Positives = 17/32 (53%)
 Frame = +2

Query: 59  VMHLLIKSQDVYKPPNCQKMKTVDKLCPFAGN 154
           V+ ++ + +++   P+ +K   +  LC   GN
Sbjct: 701 VLRIMFRCEEITSDPDARKKSLMSSLCKLGGN 732


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,135,190
Number of Sequences: 37544
Number of extensions: 106322
Number of successful extensions: 225
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 224
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 225
length of database: 14,793,348
effective HSP length: 52
effective length of database: 12,841,060
effective search space used: 256821200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)