Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc20c17
(220 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AJ968562-1|CAI91546.1| 998|Apis mellifera protein ( Apis mellif... 23 0.56
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein. 22 0.75
AY336529-1|AAQ02340.1| 712|Apis mellifera transferrin protein. 21 1.7
AY336528-1|AAQ02339.1| 712|Apis mellifera transferrin protein. 21 1.7
AY217097-1|AAO39761.1| 712|Apis mellifera transferrin protein. 21 1.7
AY739659-1|AAU85298.1| 288|Apis mellifera hyperpolarization-act... 19 6.9
AY739658-1|AAU85297.1| 664|Apis mellifera hyperpolarization-act... 19 6.9
AY280848-1|AAQ16312.1| 632|Apis mellifera hyperpolarization-act... 19 6.9
DQ201783-1|ABB05503.1| 381|Apis mellifera capa receptor-like GP... 19 9.2
AY395072-1|AAQ96728.1| 593|Apis mellifera GABA neurotransmitter... 19 9.2
AY395071-1|AAQ96727.1| 646|Apis mellifera GABA neurotransmitter... 19 9.2
AY127579-1|AAN02286.1| 405|Apis mellifera venom protease precur... 19 9.2
>AJ968562-1|CAI91546.1| 998|Apis mellifera protein ( Apis mellifera
ORF for hypotheticalprotein. ).
Length = 998
Score = 22.6 bits (46), Expect = 0.56
Identities = 9/17 (52%), Positives = 13/17 (76%)
Frame = +1
Query: 4 FDQGSDTFLQLRLQVCG 54
FDQ S+ F QLR+++ G
Sbjct: 305 FDQLSERFEQLRIKILG 321
>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
Length = 1598
Score = 22.2 bits (45), Expect = 0.75
Identities = 10/16 (62%), Positives = 11/16 (68%)
Frame = -2
Query: 177 QIGLRPLQLPANGQSL 130
QIG RPL PA+ SL
Sbjct: 88 QIGSRPLHPPASSTSL 103
>AY336529-1|AAQ02340.1| 712|Apis mellifera transferrin protein.
Length = 712
Score = 21.0 bits (42), Expect = 1.7
Identities = 7/14 (50%), Positives = 9/14 (64%)
Frame = +3
Query: 24 IFTITTPSVWVKSC 65
IFTI P ++ K C
Sbjct: 33 IFTICVPEIYSKEC 46
>AY336528-1|AAQ02339.1| 712|Apis mellifera transferrin protein.
Length = 712
Score = 21.0 bits (42), Expect = 1.7
Identities = 7/14 (50%), Positives = 9/14 (64%)
Frame = +3
Query: 24 IFTITTPSVWVKSC 65
IFTI P ++ K C
Sbjct: 33 IFTICVPEIYSKEC 46
>AY217097-1|AAO39761.1| 712|Apis mellifera transferrin protein.
Length = 712
Score = 21.0 bits (42), Expect = 1.7
Identities = 7/14 (50%), Positives = 9/14 (64%)
Frame = +3
Query: 24 IFTITTPSVWVKSC 65
IFTI P ++ K C
Sbjct: 33 IFTICVPEIYSKEC 46
>AY739659-1|AAU85298.1| 288|Apis mellifera
hyperpolarization-activated ion channelvariant T
protein.
Length = 288
Score = 19.0 bits (37), Expect = 6.9
Identities = 4/12 (33%), Positives = 9/12 (75%)
Frame = -1
Query: 118 HFLAVWWFIHIL 83
H+L W+F+ ++
Sbjct: 163 HYLRTWFFLDLI 174
>AY739658-1|AAU85297.1| 664|Apis mellifera
hyperpolarization-activated ion channelvariant L
protein.
Length = 664
Score = 19.0 bits (37), Expect = 6.9
Identities = 4/12 (33%), Positives = 9/12 (75%)
Frame = -1
Query: 118 HFLAVWWFIHIL 83
H+L W+F+ ++
Sbjct: 163 HYLRTWFFLDLI 174
>AY280848-1|AAQ16312.1| 632|Apis mellifera
hyperpolarization-activated ion channel protein.
Length = 632
Score = 19.0 bits (37), Expect = 6.9
Identities = 4/12 (33%), Positives = 9/12 (75%)
Frame = -1
Query: 118 HFLAVWWFIHIL 83
H+L W+F+ ++
Sbjct: 163 HYLRTWFFLDLI 174
>DQ201783-1|ABB05503.1| 381|Apis mellifera capa receptor-like GPCR
protein.
Length = 381
Score = 18.6 bits (36), Expect = 9.2
Identities = 6/14 (42%), Positives = 12/14 (85%)
Frame = -3
Query: 104 LVVYTHLGI*LKDA 63
LVVYT +G+ ++++
Sbjct: 229 LVVYTRMGLKIRNS 242
>AY395072-1|AAQ96728.1| 593|Apis mellifera GABA neurotransmitter
transporter-1B protein.
Length = 593
Score = 18.6 bits (36), Expect = 9.2
Identities = 6/18 (33%), Positives = 9/18 (50%)
Frame = +3
Query: 42 PSVWVKSCIF*SNPKMCI 95
P W K C + P +C+
Sbjct: 487 PCCWWKICWTITTPAICV 504
>AY395071-1|AAQ96727.1| 646|Apis mellifera GABA neurotransmitter
transporter-1B protein.
Length = 646
Score = 18.6 bits (36), Expect = 9.2
Identities = 6/18 (33%), Positives = 9/18 (50%)
Frame = +3
Query: 42 PSVWVKSCIF*SNPKMCI 95
P W K C + P +C+
Sbjct: 540 PCCWWKICWTITTPAICV 557
>AY127579-1|AAN02286.1| 405|Apis mellifera venom protease precursor
protein.
Length = 405
Score = 18.6 bits (36), Expect = 9.2
Identities = 9/24 (37%), Positives = 11/24 (45%)
Frame = +1
Query: 4 FDQGSDTFLQLRLQVCG*SHASFN 75
F D+F + V G H SFN
Sbjct: 280 FQHFLDSFAGSDVTVLGWGHTSFN 303
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 67,692
Number of Sequences: 438
Number of extensions: 1307
Number of successful extensions: 12
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 46
effective length of database: 126,195
effective search space used: 3281070
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 36 (19.4 bits)
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