Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc20c09
         (602 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC32F12.07c |||ubiquitin-protein ligase E3 |Schizosaccharomyce...    27   2.1  
SPBC646.03 |||glutamyl-tRNA amidotransferase|Schizosaccharomyces...    27   2.8  
SPBC336.07 |sfc3||transcription factor TFIIIC complex subunit Sf...    27   2.8  
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual        25   8.5  
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    25   8.5  

>SPBC32F12.07c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 340

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 13/23 (56%), Positives = 16/23 (69%), Gaps = 1/23 (4%)
 Frame = +2

Query: 443 TRCPKCTLTAHTCA-PKNTRSWA 508
           TRCP+C LTA+  A P   +SWA
Sbjct: 58  TRCPQC-LTAYRIAKPPKEKSWA 79


>SPBC646.03 |||glutamyl-tRNA amidotransferase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 471

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 20/94 (21%), Positives = 39/94 (41%)
 Frame = +1

Query: 10  YNMAVLTAVDLTNASRYAIHMHRLEFISRWRTRFPHILIDYTLRPASSDDDYYVPPKLAD 189
           Y++A + + DL + +RY     +LEF   +       L  +++     D D+ V P   +
Sbjct: 353 YSLARMNSSDLFSKARYVRRAIQLEFNKNF------FLPSFSVDDPRGDIDFIVTPSFFN 406

Query: 190 RALAVKLTFSKRGCESMSCYPFHETGVVSNTTPF 291
            +  ++   S          P +  G+ S + PF
Sbjct: 407 SSQPIETPSSYSHLSDTMLVPANMAGIPSVSIPF 440


>SPBC336.07 |sfc3||transcription factor TFIIIC complex subunit
           Sfc3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1339

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 16/56 (28%), Positives = 26/56 (46%)
 Frame = +1

Query: 427 RCILVDSLSKMYFNSPYLRTEEHTIMGVDDVPAFNVRPDPDPLFPERFKGEFNEAY 594
           RCI      K Y +S     ++     VDD+P  +   + +PL P   K EF+ ++
Sbjct: 273 RCIRCLQFIKPYISSLDATEDDVDFTEVDDIPEDDELEEEEPLLPS--KEEFDASF 326


>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 4717

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 8/26 (30%), Positives = 12/26 (46%)
 Frame = +2

Query: 440  WTRCPKCTLTAHTCAPKNTRSWAWTM 517
            WT  P C ++   C  K    W +T+
Sbjct: 2359 WTNVPDCDISRFYCYTKMLGEWMFTL 2384


>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = -2

Query: 364 PPPCPNGSTLAARNPL*SLRSACT*TVS 281
           PPP    ST  + +PL S  ++CT + S
Sbjct: 317 PPPASTSSTGTSSSPLPSTSTSCTTSTS 344



 Score = 25.0 bits (52), Expect = 8.5
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = -2

Query: 364 PPPCPNGSTLAARNPL*SLRSACT*TVS 281
           PPP    ST  + +PL S  ++CT + S
Sbjct: 371 PPPASTSSTGTSSSPLLSTSTSCTTSTS 398


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,508,441
Number of Sequences: 5004
Number of extensions: 51998
Number of successful extensions: 154
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 145
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 154
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 264253462
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)