Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc20c09
         (602 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_02_0108 - 11917186-11917207,11917834-11917943,11918116-11918544     32   0.40 
11_01_0623 - 4998236-4999606                                           30   1.6  
02_03_0147 - 15738479-15738650,15739015-15739256                       29   2.1  
11_06_0632 + 25674807-25675477,25676472-25677861,25677948-256780...    29   3.7  
05_02_0081 + 6432957-6433289,6433367-6433882,6434283-6434570           28   5.0  
11_03_0123 + 10318364-10318689,10320035-10320117,10320259-10320644     28   6.5  
05_01_0437 + 3471154-3471447,3471664-3471858,3472619-3472741,347...    28   6.5  
03_02_0907 - 12297523-12297891,12298051-12298200,12298356-122984...    28   6.5  
01_06_1147 + 34892415-34893702,34894051-34894676                       28   6.5  
01_01_1018 - 8046819-8046876,8046995-8047212,8048099-8048177,804...    28   6.5  
11_01_0778 + 6496465-6496565,6497072-6497630                           27   8.7  

>06_02_0108 - 11917186-11917207,11917834-11917943,11918116-11918544
          Length = 186

 Score = 31.9 bits (69), Expect = 0.40
 Identities = 24/77 (31%), Positives = 36/77 (46%), Gaps = 9/77 (11%)
 Frame = +2

Query: 359 RRPCVKAPKIKFSLPSLDTRPTTDASWWTRCPKCTLTAHTCAPKNTRSWAWT-MCRL--- 526
           R+  +K P I  S  +L +  +   +  T  P+ +L  HT A +NTR+  WT   R+   
Sbjct: 43  RKHSMKQPPIAASWQALHSADSCQTN--TPPPQISLNTHTAAVENTRTTGWTDEARISPS 100

Query: 527 -----LTFGPIPIPCFP 562
                 T GP+P P  P
Sbjct: 101 PPRTARTRGPVPAPPLP 117


>11_01_0623 - 4998236-4999606
          Length = 456

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 21/60 (35%), Positives = 29/60 (48%), Gaps = 5/60 (8%)
 Frame = +1

Query: 367 MREGAENKVQSAEFR--YTPDNRCILVDSLSKMYFNSPYLRT---EEHTIMGVDDVPAFN 531
           MR         AE R  ++P+   +L D   + YFN   LR    ++H I G DD PAF+
Sbjct: 61  MRRLRTRPATEAEIRRFHSPEYVDLLRDLTPESYFNDAALRQKAEDDHGIGGDDDCPAFD 120


>02_03_0147 - 15738479-15738650,15739015-15739256
          Length = 137

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 12/28 (42%), Positives = 13/28 (46%)
 Frame = +2

Query: 278 TRHRSCTRRPQRLEWVTRSQRATIWTGR 361
           TR R C  RP R  W     R  +WT R
Sbjct: 61  TRRRRCAVRPPRPRWHDDELRNAVWTAR 88


>11_06_0632 +
           25674807-25675477,25676472-25677861,25677948-25678083,
           25678185-25678282,25678470-25678535,25678699-25678827,
           25679570-25679746,25680576-25680614
          Length = 901

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 12/23 (52%), Positives = 13/23 (56%)
 Frame = +1

Query: 511 DDVPAFNVRPDPDPLFPERFKGE 579
           DD  AFN  P  DPLF   F G+
Sbjct: 299 DDSSAFNQVPKSDPLFTSEFNGD 321


>05_02_0081 + 6432957-6433289,6433367-6433882,6434283-6434570
          Length = 378

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = +2

Query: 374 KAPKIKFSLPSLDTRPTTDASWWTRCPKCT 463
           + P+I++S+P L + PT     W R P  T
Sbjct: 315 QVPEIQWSVPELPSPPTASGLHWQRHPAAT 344


>11_03_0123 + 10318364-10318689,10320035-10320117,10320259-10320644
          Length = 264

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = +2

Query: 419 PTTDASWWTRCPKCTLTAHTCAPKNTRSW 505
           PT DA  WT+ P+ ++   +CA  +   W
Sbjct: 226 PTGDAPGWTQAPRHSIGVSSCASGSEDRW 254


>05_01_0437 +
           3471154-3471447,3471664-3471858,3472619-3472741,
           3473245-3473430,3473633-3473766,3473866-3474052,
           3474179-3474280
          Length = 406

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 19/58 (32%), Positives = 29/58 (50%)
 Frame = +3

Query: 192 SAGRQTDFQQARVRKHELLSVSRNRSRVQHDTVHVHADLRD*SGLRAASVLPFGQGGG 365
           +AGRQT   ++   +H+LL V     +    T H  A+    + L +A+  P G GGG
Sbjct: 18  AAGRQTRAAESVRLEHQLLRVPLEALKSTVRTNHRLAEKEIAAVLSSAAAAPGGGGGG 75


>03_02_0907 -
           12297523-12297891,12298051-12298200,12298356-12298463,
           12298693-12298815,12299039-12299312,12304895-12304973,
           12305222-12305256,12305372-12305429,12306185-12307274
          Length = 761

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 13/41 (31%), Positives = 22/41 (53%)
 Frame = +1

Query: 97  WRTRFPHILIDYTLRPASSDDDYYVPPKLADRALAVKLTFS 219
           W  R  H++  +   P+SS  D+ +     D+A+A K +FS
Sbjct: 345 WMKRSSHLVHAWQYDPSSSRSDFVLACLRQDKAIASKSSFS 385


>01_06_1147 + 34892415-34893702,34894051-34894676
          Length = 637

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 13/39 (33%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
 Frame = +2

Query: 434 SWWTRCPKCTL-TAHTCAPKNTRSWAWTMCRLLTFGPIP 547
           +W +  P CT     TC P N+R     +  +  FGP+P
Sbjct: 48  NWSSAAPVCTSWVGVTCTPDNSRVQTLRLPAVGLFGPLP 86


>01_01_1018 -
           8046819-8046876,8046995-8047212,8048099-8048177,
           8048455-8048540,8048698-8048983,8049063-8049205,
           8049308-8049508,8049626-8049754,8050463-8050738,
           8050823-8051098,8051364-8052364,8052452-8052634,
           8052865-8052937,8053205-8053313,8053622-8053785
          Length = 1093

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 14/49 (28%), Positives = 20/49 (40%), Gaps = 1/49 (2%)
 Frame = +2

Query: 356 GRRPCVKAPKIKFSLPSLDTRPTTDASWWTRCPKCTLTAH-TCAPKNTR 499
           GR   + + K K+           +A WW +C KC    H  CA  N +
Sbjct: 575 GRCHHLSSAKAKYQKRFSYAETDAEAEWWVQCDKCKAWQHQICALFNPK 623


>11_01_0778 + 6496465-6496565,6497072-6497630
          Length = 219

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = +2

Query: 419 PTTDASWWTRCPKCTLTAHTCAPKNTRSW 505
           PT DA  WT+ P+ ++   T A  +  SW
Sbjct: 166 PTGDAPGWTQAPRHSIGVSTWASASEDSW 194


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,552,609
Number of Sequences: 37544
Number of extensions: 388294
Number of successful extensions: 1102
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1079
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1102
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1431112012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)