Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc20c09
(602 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC018698-1|AAH18698.1| 504|Homo sapiens PRP19/PSO4 pre-mRNA pro... 34 0.44
BC018665-1|AAH18665.1| 504|Homo sapiens PRP19/PSO4 pre-mRNA pro... 34 0.44
BC008719-1|AAH08719.1| 504|Homo sapiens PRP19/PSO4 pre-mRNA pro... 34 0.44
AJ131186-1|CAB51857.1| 504|Homo sapiens nuclear matrix protein ... 34 0.44
AY714129-1|AAU94938.1| 4186|Homo sapiens anchor protein protein. 31 4.1
AF231023-1|AAF61929.1| 3312|Homo sapiens protocadherin Flamingo ... 31 4.1
U02714-1|AAA17370.1| 255|Homo sapiens folate binding protein pr... 30 5.4
AF091073-1|AAC72942.1| 103|Homo sapiens ABC transporter protein. 30 5.4
BC103846-1|AAI03847.1| 127|Homo sapiens keratin associated prot... 30 7.2
BC103845-1|AAI03846.1| 127|Homo sapiens keratin associated prot... 30 7.2
AK128756-1|BAC87601.1| 181|Homo sapiens protein ( Homo sapiens ... 30 7.2
AJ583817-1|CAE47744.2| 1124|Homo sapiens ubiquitin specific prot... 30 7.2
AJ406942-1|CAC27581.1| 127|Homo sapiens keratin associated prot... 30 7.2
U43899-1|AAC50734.1| 540|Homo sapiens STAM protein. 29 9.5
BC030586-1|AAH30586.1| 403|Homo sapiens STAM protein protein. 29 9.5
AJ406945-1|CAC27584.1| 193|Homo sapiens keratin associated prot... 29 9.5
AJ400858-1|CAC14143.1| 2167|Homo sapiens MUC4 protein splice var... 29 9.5
AJ400857-1|CAC14142.1| 1827|Homo sapiens MUC4 protein splice var... 29 9.5
AJ400856-1|CAC14141.1| 1256|Homo sapiens MUC4 protein splice var... 29 9.5
AJ400855-1|CAC14140.1| 1215|Homo sapiens MUC4 protein splice var... 29 9.5
AJ400854-1|CAC14139.1| 1214|Homo sapiens MUC4 protein splice var... 29 9.5
AJ400853-1|CAC14138.1| 1201|Homo sapiens MUC4 protein splice var... 29 9.5
AJ400852-1|CAC14137.1| 1199|Homo sapiens MUC4 protein splice var... 29 9.5
AJ400851-1|CAC14136.1| 1187|Homo sapiens MUC4 protein splice var... 29 9.5
AJ400850-1|CAC14135.1| 1157|Homo sapiens MUC4 protein splice var... 29 9.5
AJ400849-1|CAC14134.1| 1157|Homo sapiens MUC4 protein splice var... 29 9.5
AJ400633-1|CAC10062.1| 1187|Homo sapiens MUC4 protein variant VI... 29 9.5
AJ277412-1|CAC10061.1| 2117|Homo sapiens mucin 4, variant V3 pro... 29 9.5
AJ276359-1|CAB81773.1| 2169|Homo sapiens mucin 4 protein. 29 9.5
AF522055-1|AAM66747.1| 2169|Homo sapiens MUC4 protein. 29 9.5
>BC018698-1|AAH18698.1| 504|Homo sapiens PRP19/PSO4 pre-mRNA
processing factor 19 homolog (S. cerevisiae) protein.
Length = 504
Score = 33.9 bits (74), Expect = 0.44
Identities = 19/56 (33%), Positives = 28/56 (50%)
Frame = +1
Query: 115 HILIDYTLRPASSDDDYYVPPKLADRALAVKLTFSKRGCESMSCYPFHETGVVSNT 282
H DY L +SSDD Y+ + + K+T GC S++C FH G++ T
Sbjct: 315 HATGDYLL--SSSDDQYWAFSDIQTGRVLTKVTDETSGC-SLTCAQFHPDGLIFGT 367
>BC018665-1|AAH18665.1| 504|Homo sapiens PRP19/PSO4 pre-mRNA
processing factor 19 homolog (S. cerevisiae) protein.
Length = 504
Score = 33.9 bits (74), Expect = 0.44
Identities = 19/56 (33%), Positives = 28/56 (50%)
Frame = +1
Query: 115 HILIDYTLRPASSDDDYYVPPKLADRALAVKLTFSKRGCESMSCYPFHETGVVSNT 282
H DY L +SSDD Y+ + + K+T GC S++C FH G++ T
Sbjct: 315 HATGDYLL--SSSDDQYWAFSDIQTGRVLTKVTDETSGC-SLTCAQFHPDGLIFGT 367
>BC008719-1|AAH08719.1| 504|Homo sapiens PRP19/PSO4 pre-mRNA
processing factor 19 homolog (S. cerevisiae) protein.
Length = 504
Score = 33.9 bits (74), Expect = 0.44
Identities = 19/56 (33%), Positives = 28/56 (50%)
Frame = +1
Query: 115 HILIDYTLRPASSDDDYYVPPKLADRALAVKLTFSKRGCESMSCYPFHETGVVSNT 282
H DY L +SSDD Y+ + + K+T GC S++C FH G++ T
Sbjct: 315 HATGDYLL--SSSDDQYWAFSDIQTGRVLTKVTDETSGC-SLTCAQFHPDGLIFGT 367
>AJ131186-1|CAB51857.1| 504|Homo sapiens nuclear matrix protein
NMP200 protein.
Length = 504
Score = 33.9 bits (74), Expect = 0.44
Identities = 19/56 (33%), Positives = 28/56 (50%)
Frame = +1
Query: 115 HILIDYTLRPASSDDDYYVPPKLADRALAVKLTFSKRGCESMSCYPFHETGVVSNT 282
H DY L +SSDD Y+ + + K+T GC S++C FH G++ T
Sbjct: 315 HATGDYLL--SSSDDQYWAFSDIQTGRVLTKVTDETSGC-SLTCAQFHPDGLIFGT 367
>AY714129-1|AAU94938.1| 4186|Homo sapiens anchor protein protein.
Length = 4186
Score = 30.7 bits (66), Expect = 4.1
Identities = 29/81 (35%), Positives = 34/81 (41%), Gaps = 6/81 (7%)
Frame = +2
Query: 359 RRPCVKAPKIKFSLPSLDTRPTT--DASWWTRCPKCTLTAHTCAPKNTRSWAWTMCRLLT 532
RR C+ P S P LD+ P T A P+ + TA APK RS CR L
Sbjct: 301 RRNCL--PGASGSGPELDSAPRTARTAPASGSAPRESRTAPEPAPKRMRSRGLFRCRFLP 358
Query: 533 FGPIP----IPCFPNALKANS 583
P P +P P A K S
Sbjct: 359 QRPGPRPPGLPARPEARKVTS 379
>AF231023-1|AAF61929.1| 3312|Homo sapiens protocadherin Flamingo 1
protein.
Length = 3312
Score = 30.7 bits (66), Expect = 4.1
Identities = 29/81 (35%), Positives = 34/81 (41%), Gaps = 6/81 (7%)
Frame = +2
Query: 359 RRPCVKAPKIKFSLPSLDTRPTT--DASWWTRCPKCTLTAHTCAPKNTRSWAWTMCRLLT 532
RR C+ P S P LD+ P T A P+ + TA APK RS CR L
Sbjct: 231 RRNCL--PGASGSGPELDSAPRTARTAPASGSAPRESRTAPEPAPKRMRSRGLFRCRFLP 288
Query: 533 FGPIP----IPCFPNALKANS 583
P P +P P A K S
Sbjct: 289 QRPGPRPPGLPARPEARKVTS 309
>U02714-1|AAA17370.1| 255|Homo sapiens folate binding protein
protein.
Length = 255
Score = 30.3 bits (65), Expect = 5.4
Identities = 12/26 (46%), Positives = 13/26 (50%)
Frame = +2
Query: 437 WWTRCPKCTLTAHTCAPKNTRSWAWT 514
WW C LT+HTC R W WT
Sbjct: 136 WWEDC----LTSHTCKSNWHRGWDWT 157
>AF091073-1|AAC72942.1| 103|Homo sapiens ABC transporter protein.
Length = 103
Score = 30.3 bits (65), Expect = 5.4
Identities = 14/38 (36%), Positives = 16/38 (42%), Gaps = 3/38 (7%)
Frame = +2
Query: 413 TRPTTDASWWTRCPKCTLTAHTCAPK---NTRSWAWTM 517
TR T+ SWW R P TC P RS W +
Sbjct: 31 TRSTSSPSWWMRSPSSPRVPTTCEPSTWVRVRSSIWEL 68
>BC103846-1|AAI03847.1| 127|Homo sapiens keratin associated protein
4-10 protein.
Length = 127
Score = 29.9 bits (64), Expect = 7.2
Identities = 18/69 (26%), Positives = 27/69 (39%)
Frame = -2
Query: 307 RSACT*TVSCWTRLRFRETDSSSCFRTRAC*KSV*RPALCRPISAAHNNRRHLTRDATCS 128
R +C T C SC +T C + RP+ CRP+ R ++C
Sbjct: 26 RPSCCQTTCCCPSCVVSSCCRPSCSQTTCCQTTCCRPSCCRPV-CCQTTCRPSCGVSSCC 84
Query: 127 RSVYAET*C 101
R + +T C
Sbjct: 85 RPLCCQTTC 93
>BC103845-1|AAI03846.1| 127|Homo sapiens keratin associated protein
4-10 protein.
Length = 127
Score = 29.9 bits (64), Expect = 7.2
Identities = 18/69 (26%), Positives = 27/69 (39%)
Frame = -2
Query: 307 RSACT*TVSCWTRLRFRETDSSSCFRTRAC*KSV*RPALCRPISAAHNNRRHLTRDATCS 128
R +C T C SC +T C + RP+ CRP+ R ++C
Sbjct: 26 RPSCCQTTCCCPSCVVSSCCRPSCSQTTCCQTTCCRPSCCRPV-CCQTTCRPSCGVSSCC 84
Query: 127 RSVYAET*C 101
R + +T C
Sbjct: 85 RPLCCQTTC 93
>AK128756-1|BAC87601.1| 181|Homo sapiens protein ( Homo sapiens
cDNA FLJ44869 fis, clone BRAMY2015516. ).
Length = 181
Score = 29.9 bits (64), Expect = 7.2
Identities = 20/59 (33%), Positives = 25/59 (42%), Gaps = 1/59 (1%)
Frame = +2
Query: 272 CPTRHRSCTRRPQRLEWVTRSQRATIWTGRRPCVKAPKIKFSLPSLDTRPTTDASW-WT 445
CP+ C L W + A W PC+ P + F+LP D RPT W WT
Sbjct: 16 CPSMPWPCPHPALALHWSCPAL-ALPWPW--PCL-LPGLAFALPWPDPRPTESMKWPWT 70
>AJ583817-1|CAE47744.2| 1124|Homo sapiens ubiquitin specific
proteinase 43 protein.
Length = 1124
Score = 29.9 bits (64), Expect = 7.2
Identities = 34/112 (30%), Positives = 46/112 (41%)
Frame = +1
Query: 211 TFSKRGCESMSCYPFHETGVVSNTTPFMYTQTSETRVGYAQPACYHLDRAAAMREGAENK 390
TF C S+ P +T +S T F RVG A P L AA+R+
Sbjct: 262 TFDPFLCVSLPI-PLRQTRFLSVTLVFPSKSQRFLRVGLAVPI---LSTVAALRK----- 312
Query: 391 VQSAEFRYTPDNRCILVDSLSKMYFNSPYLRTEEHTIMGVDDVPAFNVRPDP 546
AE P + ILV+ + S + + +TI D+V AF V P P
Sbjct: 313 -MVAEEGGVPADEVILVELYPSGFQRSFFDEEDLNTIAEGDNVYAFQVPPSP 363
>AJ406942-1|CAC27581.1| 127|Homo sapiens keratin associated protein
4.10 protein.
Length = 127
Score = 29.9 bits (64), Expect = 7.2
Identities = 18/69 (26%), Positives = 27/69 (39%)
Frame = -2
Query: 307 RSACT*TVSCWTRLRFRETDSSSCFRTRAC*KSV*RPALCRPISAAHNNRRHLTRDATCS 128
R +C T C SC +T C + RP+ CRP+ R ++C
Sbjct: 26 RPSCCQTTCCCPSCVVSSCCRPSCSQTTCCQTTCCRPSCCRPV-CCQTTCRPSCGVSSCC 84
Query: 127 RSVYAET*C 101
R + +T C
Sbjct: 85 RPLCCQTTC 93
>U43899-1|AAC50734.1| 540|Homo sapiens STAM protein.
Length = 540
Score = 29.5 bits (63), Expect = 9.5
Identities = 11/32 (34%), Positives = 19/32 (59%)
Frame = +1
Query: 478 LRTEEHTIMGVDDVPAFNVRPDPDPLFPERFK 573
++TE+ T+ DDV + P+P+P F + K
Sbjct: 275 IKTEKKTVQFSDDVQVETIEPEPEPAFIDEDK 306
>BC030586-1|AAH30586.1| 403|Homo sapiens STAM protein protein.
Length = 403
Score = 29.5 bits (63), Expect = 9.5
Identities = 11/32 (34%), Positives = 19/32 (59%)
Frame = +1
Query: 478 LRTEEHTIMGVDDVPAFNVRPDPDPLFPERFK 573
++TE+ T+ DDV + P+P+P F + K
Sbjct: 275 IKTEKKTVQFSDDVQVETIEPEPEPAFIDEDK 306
>AJ406945-1|CAC27584.1| 193|Homo sapiens keratin associated protein
4.15 protein.
Length = 193
Score = 29.5 bits (63), Expect = 9.5
Identities = 23/72 (31%), Positives = 27/72 (37%)
Frame = -2
Query: 307 RSACT*TVSCWTRLRFRETDSSSCFRTRAC*KSV*RPALCRPISAAHNNRRHLTRDATCS 128
RS C +V C SSC R C S RP CRP R + +C
Sbjct: 114 RSQCCQSVCCQPTCCRPSCCISSCCRPSCCESSCCRPCCCRPCCCL----RPVCGRVSCH 169
Query: 127 RSVYAET*CAIS 92
+ Y T C IS
Sbjct: 170 TTCYRPT-CVIS 180
>AJ400858-1|CAC14143.1| 2167|Homo sapiens MUC4 protein splice variant
sv21 protein.
Length = 2167
Score = 29.5 bits (63), Expect = 9.5
Identities = 35/135 (25%), Positives = 53/135 (39%), Gaps = 3/135 (2%)
Frame = +1
Query: 172 PPKLADRALAVKLTFSKRGCESMSCYPFHETGVVSNTTPFMYTQTSETRVGYAQP-ACYH 348
PP + L T + S S F T ++SN TP T TS G+A P A
Sbjct: 944 PPSITSSGLTSPQTQTHTLSPSGSGKTF-TTALISNATPLPVTSTSSASTGHATPLAVSS 1002
Query: 349 LDRAAAMREGAENKVQSAEFRYTPDNRCILVDSLSKMYFNSPYLRTEEHTIMGVDDVPAF 528
A+ + + K++++ TP + D + + P T TI+ A
Sbjct: 1003 ATSASTVSSDSPLKMETSGMT-TPS---LKTDGGRRTATSPP--PTTSQTIISTIPSTAM 1056
Query: 529 NVRPD--PDPLFPER 567
+ R P P+ PER
Sbjct: 1057 HTRSTAAPIPILPER 1071
>AJ400857-1|CAC14142.1| 1827|Homo sapiens MUC4 protein splice variant
sv20 protein.
Length = 1827
Score = 29.5 bits (63), Expect = 9.5
Identities = 35/135 (25%), Positives = 53/135 (39%), Gaps = 3/135 (2%)
Frame = +1
Query: 172 PPKLADRALAVKLTFSKRGCESMSCYPFHETGVVSNTTPFMYTQTSETRVGYAQP-ACYH 348
PP + L T + S S F T ++SN TP T TS G+A P A
Sbjct: 944 PPSITSSGLTSPQTQTHTLSPSGSGKTF-TTALISNATPLPVTSTSSASTGHATPLAVSS 1002
Query: 349 LDRAAAMREGAENKVQSAEFRYTPDNRCILVDSLSKMYFNSPYLRTEEHTIMGVDDVPAF 528
A+ + + K++++ TP + D + + P T TI+ A
Sbjct: 1003 ATSASTVSSDSPLKMETSGMT-TPS---LKTDGGRRTATSPP--PTTSQTIISTIPSTAM 1056
Query: 529 NVRPD--PDPLFPER 567
+ R P P+ PER
Sbjct: 1057 HTRSTAAPIPILPER 1071
>AJ400856-1|CAC14141.1| 1256|Homo sapiens MUC4 protein splice variant
sv19 protein.
Length = 1256
Score = 29.5 bits (63), Expect = 9.5
Identities = 35/135 (25%), Positives = 53/135 (39%), Gaps = 3/135 (2%)
Frame = +1
Query: 172 PPKLADRALAVKLTFSKRGCESMSCYPFHETGVVSNTTPFMYTQTSETRVGYAQP-ACYH 348
PP + L T + S S F T ++SN TP T TS G+A P A
Sbjct: 944 PPSITSSGLTSPQTQTHTLSPSGSGKTF-TTALISNATPLPVTSTSSASTGHATPLAVSS 1002
Query: 349 LDRAAAMREGAENKVQSAEFRYTPDNRCILVDSLSKMYFNSPYLRTEEHTIMGVDDVPAF 528
A+ + + K++++ TP + D + + P T TI+ A
Sbjct: 1003 ATSASTVSSDSPLKMETSGMT-TPS---LKTDGGRRTATSPP--PTTSQTIISTIPSTAM 1056
Query: 529 NVRPD--PDPLFPER 567
+ R P P+ PER
Sbjct: 1057 HTRSTAAPIPILPER 1071
>AJ400855-1|CAC14140.1| 1215|Homo sapiens MUC4 protein splice variant
sv18 protein.
Length = 1215
Score = 29.5 bits (63), Expect = 9.5
Identities = 35/135 (25%), Positives = 53/135 (39%), Gaps = 3/135 (2%)
Frame = +1
Query: 172 PPKLADRALAVKLTFSKRGCESMSCYPFHETGVVSNTTPFMYTQTSETRVGYAQP-ACYH 348
PP + L T + S S F T ++SN TP T TS G+A P A
Sbjct: 944 PPSITSSGLTSPQTQTHTLSPSGSGKTF-TTALISNATPLPVTSTSSASTGHATPLAVSS 1002
Query: 349 LDRAAAMREGAENKVQSAEFRYTPDNRCILVDSLSKMYFNSPYLRTEEHTIMGVDDVPAF 528
A+ + + K++++ TP + D + + P T TI+ A
Sbjct: 1003 ATSASTVSSDSPLKMETSGMT-TPS---LKTDGGRRTATSPP--PTTSQTIISTIPSTAM 1056
Query: 529 NVRPD--PDPLFPER 567
+ R P P+ PER
Sbjct: 1057 HTRSTAAPIPILPER 1071
>AJ400854-1|CAC14139.1| 1214|Homo sapiens MUC4 protein splice variant
sv17 protein.
Length = 1214
Score = 29.5 bits (63), Expect = 9.5
Identities = 35/135 (25%), Positives = 53/135 (39%), Gaps = 3/135 (2%)
Frame = +1
Query: 172 PPKLADRALAVKLTFSKRGCESMSCYPFHETGVVSNTTPFMYTQTSETRVGYAQP-ACYH 348
PP + L T + S S F T ++SN TP T TS G+A P A
Sbjct: 944 PPSITSSGLTSPQTQTHTLSPSGSGKTF-TTALISNATPLPVTSTSSASTGHATPLAVSS 1002
Query: 349 LDRAAAMREGAENKVQSAEFRYTPDNRCILVDSLSKMYFNSPYLRTEEHTIMGVDDVPAF 528
A+ + + K++++ TP + D + + P T TI+ A
Sbjct: 1003 ATSASTVSSDSPLKMETSGMT-TPS---LKTDGGRRTATSPP--PTTSQTIISTIPSTAM 1056
Query: 529 NVRPD--PDPLFPER 567
+ R P P+ PER
Sbjct: 1057 HTRSTAAPIPILPER 1071
>AJ400853-1|CAC14138.1| 1201|Homo sapiens MUC4 protein splice variant
sv16 protein.
Length = 1201
Score = 29.5 bits (63), Expect = 9.5
Identities = 35/135 (25%), Positives = 53/135 (39%), Gaps = 3/135 (2%)
Frame = +1
Query: 172 PPKLADRALAVKLTFSKRGCESMSCYPFHETGVVSNTTPFMYTQTSETRVGYAQP-ACYH 348
PP + L T + S S F T ++SN TP T TS G+A P A
Sbjct: 944 PPSITSSGLTSPQTQTHTLSPSGSGKTF-TTALISNATPLPVTSTSSASTGHATPLAVSS 1002
Query: 349 LDRAAAMREGAENKVQSAEFRYTPDNRCILVDSLSKMYFNSPYLRTEEHTIMGVDDVPAF 528
A+ + + K++++ TP + D + + P T TI+ A
Sbjct: 1003 ATSASTVSSDSPLKMETSGMT-TPS---LKTDGGRRTATSPP--PTTSQTIISTIPSTAM 1056
Query: 529 NVRPD--PDPLFPER 567
+ R P P+ PER
Sbjct: 1057 HTRSTAAPIPILPER 1071
>AJ400852-1|CAC14137.1| 1199|Homo sapiens MUC4 protein splice variant
sv15 protein.
Length = 1199
Score = 29.5 bits (63), Expect = 9.5
Identities = 35/135 (25%), Positives = 53/135 (39%), Gaps = 3/135 (2%)
Frame = +1
Query: 172 PPKLADRALAVKLTFSKRGCESMSCYPFHETGVVSNTTPFMYTQTSETRVGYAQP-ACYH 348
PP + L T + S S F T ++SN TP T TS G+A P A
Sbjct: 944 PPSITSSGLTSPQTQTHTLSPSGSGKTF-TTALISNATPLPVTSTSSASTGHATPLAVSS 1002
Query: 349 LDRAAAMREGAENKVQSAEFRYTPDNRCILVDSLSKMYFNSPYLRTEEHTIMGVDDVPAF 528
A+ + + K++++ TP + D + + P T TI+ A
Sbjct: 1003 ATSASTVSSDSPLKMETSGMT-TPS---LKTDGGRRTATSPP--PTTSQTIISTIPSTAM 1056
Query: 529 NVRPD--PDPLFPER 567
+ R P P+ PER
Sbjct: 1057 HTRSTAAPIPILPER 1071
>AJ400851-1|CAC14136.1| 1187|Homo sapiens MUC4 protein splice variant
sv14 protein.
Length = 1187
Score = 29.5 bits (63), Expect = 9.5
Identities = 35/135 (25%), Positives = 53/135 (39%), Gaps = 3/135 (2%)
Frame = +1
Query: 172 PPKLADRALAVKLTFSKRGCESMSCYPFHETGVVSNTTPFMYTQTSETRVGYAQP-ACYH 348
PP + L T + S S F T ++SN TP T TS G+A P A
Sbjct: 944 PPSITSSGLTSPQTQTHTLSPSGSGKTF-TTALISNATPLPVTSTSSASTGHATPLAVSS 1002
Query: 349 LDRAAAMREGAENKVQSAEFRYTPDNRCILVDSLSKMYFNSPYLRTEEHTIMGVDDVPAF 528
A+ + + K++++ TP + D + + P T TI+ A
Sbjct: 1003 ATSASTVSSDSPLKMETSGMT-TPS---LKTDGGRRTATSPP--PTTSQTIISTIPSTAM 1056
Query: 529 NVRPD--PDPLFPER 567
+ R P P+ PER
Sbjct: 1057 HTRSTAAPIPILPER 1071
>AJ400850-1|CAC14135.1| 1157|Homo sapiens MUC4 protein splice variant
sv13 protein.
Length = 1157
Score = 29.5 bits (63), Expect = 9.5
Identities = 35/135 (25%), Positives = 53/135 (39%), Gaps = 3/135 (2%)
Frame = +1
Query: 172 PPKLADRALAVKLTFSKRGCESMSCYPFHETGVVSNTTPFMYTQTSETRVGYAQP-ACYH 348
PP + L T + S S F T ++SN TP T TS G+A P A
Sbjct: 944 PPSITSSGLTSPQTQTHTLSPSGSGKTF-TTALISNATPLPVTSTSSASTGHATPLAVSS 1002
Query: 349 LDRAAAMREGAENKVQSAEFRYTPDNRCILVDSLSKMYFNSPYLRTEEHTIMGVDDVPAF 528
A+ + + K++++ TP + D + + P T TI+ A
Sbjct: 1003 ATSASTVSSDSPLKMETSGMT-TPS---LKTDGGRRTATSPP--PTTSQTIISTIPSTAM 1056
Query: 529 NVRPD--PDPLFPER 567
+ R P P+ PER
Sbjct: 1057 HTRSTAAPIPILPER 1071
>AJ400849-1|CAC14134.1| 1157|Homo sapiens MUC4 protein splice variant
sv12 protein.
Length = 1157
Score = 29.5 bits (63), Expect = 9.5
Identities = 35/135 (25%), Positives = 53/135 (39%), Gaps = 3/135 (2%)
Frame = +1
Query: 172 PPKLADRALAVKLTFSKRGCESMSCYPFHETGVVSNTTPFMYTQTSETRVGYAQP-ACYH 348
PP + L T + S S F T ++SN TP T TS G+A P A
Sbjct: 944 PPSITSSGLTSPQTQTHTLSPSGSGKTF-TTALISNATPLPVTSTSSASTGHATPLAVSS 1002
Query: 349 LDRAAAMREGAENKVQSAEFRYTPDNRCILVDSLSKMYFNSPYLRTEEHTIMGVDDVPAF 528
A+ + + K++++ TP + D + + P T TI+ A
Sbjct: 1003 ATSASTVSSDSPLKMETSGMT-TPS---LKTDGGRRTATSPP--PTTSQTIISTIPSTAM 1056
Query: 529 NVRPD--PDPLFPER 567
+ R P P+ PER
Sbjct: 1057 HTRSTAAPIPILPER 1071
>AJ400633-1|CAC10062.1| 1187|Homo sapiens MUC4 protein variant VI1
protein.
Length = 1187
Score = 29.5 bits (63), Expect = 9.5
Identities = 35/135 (25%), Positives = 53/135 (39%), Gaps = 3/135 (2%)
Frame = +1
Query: 172 PPKLADRALAVKLTFSKRGCESMSCYPFHETGVVSNTTPFMYTQTSETRVGYAQP-ACYH 348
PP + L T + S S F T ++SN TP T TS G+A P A
Sbjct: 944 PPSITSSGLTSPQTQTHTLSPSGSGKTF-TTALISNATPLPVTSTSSASTGHATPLAVSS 1002
Query: 349 LDRAAAMREGAENKVQSAEFRYTPDNRCILVDSLSKMYFNSPYLRTEEHTIMGVDDVPAF 528
A+ + + K++++ TP + D + + P T TI+ A
Sbjct: 1003 ATSASTVSSDSPLKMETSGMT-TPS---LKTDGGRRTATSPP--PTTSQTIISTIPSTAM 1056
Query: 529 NVRPD--PDPLFPER 567
+ R P P+ PER
Sbjct: 1057 HTRSTAAPIPILPER 1071
>AJ277412-1|CAC10061.1| 2117|Homo sapiens mucin 4, variant V3 protein.
Length = 2117
Score = 29.5 bits (63), Expect = 9.5
Identities = 35/135 (25%), Positives = 53/135 (39%), Gaps = 3/135 (2%)
Frame = +1
Query: 172 PPKLADRALAVKLTFSKRGCESMSCYPFHETGVVSNTTPFMYTQTSETRVGYAQP-ACYH 348
PP + L T + S S F T ++SN TP T TS G+A P A
Sbjct: 944 PPSITSSGLTSPQTQTHTLSPSGSGKTF-TTALISNATPLPVTSTSSASTGHATPLAVSS 1002
Query: 349 LDRAAAMREGAENKVQSAEFRYTPDNRCILVDSLSKMYFNSPYLRTEEHTIMGVDDVPAF 528
A+ + + K++++ TP + D + + P T TI+ A
Sbjct: 1003 ATSASTVSSDSPLKMETSGMT-TPS---LKTDGGRRTATSPP--PTTSQTIISTIPSTAM 1056
Query: 529 NVRPD--PDPLFPER 567
+ R P P+ PER
Sbjct: 1057 HTRSTAAPIPILPER 1071
>AJ276359-1|CAB81773.1| 2169|Homo sapiens mucin 4 protein.
Length = 2169
Score = 29.5 bits (63), Expect = 9.5
Identities = 35/135 (25%), Positives = 53/135 (39%), Gaps = 3/135 (2%)
Frame = +1
Query: 172 PPKLADRALAVKLTFSKRGCESMSCYPFHETGVVSNTTPFMYTQTSETRVGYAQP-ACYH 348
PP + L T + S S F T ++SN TP T TS G+A P A
Sbjct: 944 PPSITSSGLTSPQTQTHTLSPSGSGKTF-TTALISNATPLPVTSTSSASTGHATPLAVSS 1002
Query: 349 LDRAAAMREGAENKVQSAEFRYTPDNRCILVDSLSKMYFNSPYLRTEEHTIMGVDDVPAF 528
A+ + + K++++ TP + D + + P T TI+ A
Sbjct: 1003 ATSASTVSSDSPLKMETSGMT-TPS---LKTDGGRRTATSPP--PTTSQTIISTIPSTAM 1056
Query: 529 NVRPD--PDPLFPER 567
+ R P P+ PER
Sbjct: 1057 HTRSTAAPIPILPER 1071
>AF522055-1|AAM66747.1| 2169|Homo sapiens MUC4 protein.
Length = 2169
Score = 29.5 bits (63), Expect = 9.5
Identities = 35/135 (25%), Positives = 53/135 (39%), Gaps = 3/135 (2%)
Frame = +1
Query: 172 PPKLADRALAVKLTFSKRGCESMSCYPFHETGVVSNTTPFMYTQTSETRVGYAQP-ACYH 348
PP + L T + S S F T ++SN TP T TS G+A P A
Sbjct: 944 PPSITSSGLTSPQTQTHTLSPSGSGKTF-TTALISNATPLPVTSTSSASTGHATPLAVSS 1002
Query: 349 LDRAAAMREGAENKVQSAEFRYTPDNRCILVDSLSKMYFNSPYLRTEEHTIMGVDDVPAF 528
A+ + + K++++ TP + D + + P T TI+ A
Sbjct: 1003 ATSASTVSSDSPLKMETSGMT-TPS---LKTDGGRRTATSPP--PTTSQTIISTIPSTAM 1056
Query: 529 NVRPD--PDPLFPER 567
+ R P P+ PER
Sbjct: 1057 HTRSTAAPIPILPER 1071
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 89,855,587
Number of Sequences: 237096
Number of extensions: 2010366
Number of successful extensions: 4257
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 4000
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4238
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 6354183230
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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