Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc20c04
(699 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
M14954-2|AAA70222.2| 1219|Drosophila melanogaster putative ORF2 ... 99 7e-21
AY180919-1|AAN87272.1| 884|Drosophila melanogaster ORF1 protein. 91 2e-18
AF456125-1|AAL57609.1| 832|Drosophila melanogaster reverse tran... 91 2e-18
AJ302712-2|CAC16871.1| 1227|Drosophila melanogaster pol protein. 85 9e-17
M17214-2|AAA28508.1| 858|Drosophila melanogaster protein ( D.me... 75 9e-14
X17551-2|CAA35587.1| 888|Drosophila melanogaster protein ( D.me... 71 2e-12
AY047531-1|AAK77263.1| 888|Drosophila melanogaster GH03753p pro... 71 2e-12
AY060438-1|AAL25477.1| 906|Drosophila melanogaster LD46618p pro... 68 1e-11
U14101-2|AAC46494.1| 1084|Drosophila melanogaster putative rever... 67 2e-11
AY600955-2|AAT12845.1| 1092|Drosophila melanogaster pol protein ... 66 3e-11
AF237761-2|AAF81411.1| 908|Drosophila melanogaster unknown prot... 65 1e-10
U02279-1|AAA18301.1| 964|Drosophila melanogaster protein ( Dros... 64 2e-10
AY561850-2|AAS68534.1| 1080|Drosophila melanogaster pol protein ... 64 2e-10
AM040245-1|CAJ13341.1| 1042|Drosophila melanogaster pol protein ... 64 2e-10
AJ566116-2|CAD92793.1| 1080|Drosophila melanogaster pol protein ... 64 2e-10
AJ278684-2|CAB99192.1| 989|Drosophila melanogaster endonuclease... 64 2e-10
AY035777-2|AAK77971.1| 1080|Drosophila melanogaster pol protein ... 63 4e-10
AY089343-1|AAL90081.2| 718|Drosophila melanogaster AT16518p pro... 60 2e-09
AM040242-2|CAJ13338.1| 1103|Drosophila melanogaster pol protein ... 60 3e-09
AM040243-1|CAJ13339.1| 656|Drosophila melanogaster pol protein ... 60 4e-09
AJ542582-2|CAD65871.1| 1103|Drosophila melanogaster pol protein ... 60 4e-09
AJ542581-2|CAD65869.1| 1103|Drosophila melanogaster pol protein ... 60 4e-09
AY060323-1|AAL25362.1| 241|Drosophila melanogaster GH20809p pro... 59 7e-09
M22874-2|AAA28675.1| 916|Drosophila melanogaster protein ( D.me... 58 9e-09
X51968-2|CAA36227.1| 1021|Drosophila melanogaster protein ( Dros... 47 2e-05
AY061560-1|AAL29108.1| 510|Drosophila melanogaster LP10922p pro... 31 2.0
AE014296-3336|AAF51576.1| 510|Drosophila melanogaster CG5618-PA... 31 2.0
AE014134-2811|AAF53590.3| 1876|Drosophila melanogaster CG4841-PA... 29 6.1
X51548-1|CAA35923.1| 1237|Drosophila melanogaster protein ( Dros... 29 8.0
AE014296-2990|AAN11687.1| 1199|Drosophila melanogaster CG8127-PC... 29 8.0
>M14954-2|AAA70222.2| 1219|Drosophila melanogaster putative ORF2
protein.
Length = 1219
Score = 98.7 bits (235), Expect = 7e-21
Identities = 54/149 (36%), Positives = 83/149 (55%)
Frame = -1
Query: 612 EPFTWSEFTISLQSRRNTTPGMDDYPYLLIKNLDESAQKXXXXXXXXXXXXNYIPQAWKT 433
E T+ E + +LQ+ + PG++ Y +IKN + K ++IPQA+KT
Sbjct: 431 ENITYLELSSALQTLKGCAPGLNRISYQMIKNSSHTT-KNRITKLFNEIFNSHIPQAYKT 489
Query: 432 QCVIPILKPDKAPELASSYRPISLSSCLGKIFETMLKVRLDWYVEANHIIPDVQYGFRRG 253
+IPILKP+ SSYRPISL+ C+ KI + ++ RL W V N++I D Q+GF++G
Sbjct: 490 SLIIPILKPNTDKTKTSSYRPISLNCCIAKILDKIIAKRLWWLVTYNNLINDKQFGFKKG 549
Query: 252 RSCADSFISLISDLDITPPSLLTGITLLN 166
+S +D L D IT + T + L+
Sbjct: 550 KSTSDCL--LYVDYLITKSKMHTSLVTLD 576
>AY180919-1|AAN87272.1| 884|Drosophila melanogaster ORF1 protein.
Length = 884
Score = 90.6 bits (215), Expect = 2e-18
Identities = 45/113 (39%), Positives = 63/113 (55%)
Frame = -1
Query: 591 FTISLQSRRNTTPGMDDYPYLLIKNLDESAQKXXXXXXXXXXXXNYIPQAWKTQCVIPIL 412
F+I +PG+D P + +KNL SA Y P+ WK ++PIL
Sbjct: 467 FSIVKALHTRKSPGIDGIPNISLKNLPTSAINHIVNIANHCLQAGYFPRDWKIAKIVPIL 526
Query: 411 KPDKAPELASSYRPISLSSCLGKIFETMLKVRLDWYVEANHIIPDVQYGFRRG 253
KP K P+ SYRPISL S L KI E ++K+RL +++ ++ +P VQYGFR G
Sbjct: 527 KPGKPPDNPESYRPISLLSGLSKILEKLIKLRLVKFLDIHNTLPTVQYGFRNG 579
>AF456125-1|AAL57609.1| 832|Drosophila melanogaster reverse
transcriptase protein.
Length = 832
Score = 90.6 bits (215), Expect = 2e-18
Identities = 45/113 (39%), Positives = 63/113 (55%)
Frame = -1
Query: 591 FTISLQSRRNTTPGMDDYPYLLIKNLDESAQKXXXXXXXXXXXXNYIPQAWKTQCVIPIL 412
F+I +PG+D P + +KNL SA Y P+ WK ++PIL
Sbjct: 415 FSIVKALHTRKSPGIDGIPNISLKNLPTSAINHIVNIANHCLQAGYFPRDWKIAKIVPIL 474
Query: 411 KPDKAPELASSYRPISLSSCLGKIFETMLKVRLDWYVEANHIIPDVQYGFRRG 253
KP K P+ SYRPISL S L KI E ++K+RL +++ ++ +P VQYGFR G
Sbjct: 475 KPGKPPDNPESYRPISLLSGLSKILEKLIKLRLVKFLDIHNTLPTVQYGFRNG 527
>AJ302712-2|CAC16871.1| 1227|Drosophila melanogaster pol protein.
Length = 1227
Score = 85.0 bits (201), Expect = 9e-17
Identities = 41/128 (32%), Positives = 64/128 (50%)
Frame = -1
Query: 606 FTWSEFTISLQSRRNTTPGMDDYPYLLIKNLDESAQKXXXXXXXXXXXXNYIPQAWKTQC 427
FT E S+ + +PG D Y ++KNL + P W++
Sbjct: 437 FTLLEIENSVAKAKGKSPGADRVSYPMLKNLSPHLKTKLLDIFNQILTTGKYPHTWRSAI 496
Query: 426 VIPILKPDKAPELASSYRPISLSSCLGKIFETMLKVRLDWYVEANHIIPDVQYGFRRGRS 247
+IPI KP+K P +SYRPISL SCLGK E ++ RL W+++ +++I Q F+ S
Sbjct: 497 IIPISKPNKPPSDINSYRPISLLSCLGKTLEKIIAQRLTWFIKRHNLISHNQVAFKSNHS 556
Query: 246 CADSFISL 223
D+ + +
Sbjct: 557 TMDALLRI 564
>M17214-2|AAA28508.1| 858|Drosophila melanogaster protein (
D.melanogaster Fw repetitiveelement putative reverse
transcriptase, complete cds,and putative binding
protein, 3' end. ).
Length = 858
Score = 74.9 bits (176), Expect = 9e-14
Identities = 41/116 (35%), Positives = 59/116 (50%)
Frame = -1
Query: 558 TPGMDDYPYLLIKNLDESAQKXXXXXXXXXXXXNYIPQAWKTQCVIPILKPDKAPELASS 379
+PG D +I L SA + Y PQ WK +I I KP K +ASS
Sbjct: 451 SPGYDLITPEMIIQLPHSAVRYITKLFNAITKLGYFPQRWKMMKIIMIPKPGKNHTVASS 510
Query: 378 YRPISLSSCLGKIFETMLKVRLDWYVEANHIIPDVQYGFRRGRSCADSFISLISDL 211
YRPISL SC+ K+FE L +RL+ + ++IIP Q+GFR + + +++
Sbjct: 511 YRPISLLSCISKLFEKCLLIRLNQHQTYHNIIPAHQFGFRESHGTIEQVNRITTEI 566
>X17551-2|CAA35587.1| 888|Drosophila melanogaster protein (
D.melanogaster white-one mutant DNA with Doc retroposon,
inserted inwhite locuspromoter region. ).
Length = 888
Score = 70.5 bits (165), Expect = 2e-12
Identities = 32/82 (39%), Positives = 47/82 (57%)
Frame = -1
Query: 456 YIPQAWKTQCVIPILKPDKAPELASSYRPISLSSCLGKIFETMLKVRLDWYVEANHIIPD 277
Y PQ WK ++ I KP K SSYRPISL +CL K+FE ML +R+ ++ N+ +P
Sbjct: 483 YFPQKWKKSTIVMIPKPGKDKTQPSSYRPISLLTCLSKLFEKMLLLRISPHLRINNTLPT 542
Query: 276 VQYGFRRGRSCADSFISLISDL 211
Q+GFR + + S++
Sbjct: 543 HQFGFREKHGTIEQVNRITSEI 564
>AY047531-1|AAK77263.1| 888|Drosophila melanogaster GH03753p
protein.
Length = 888
Score = 70.5 bits (165), Expect = 2e-12
Identities = 32/82 (39%), Positives = 47/82 (57%)
Frame = -1
Query: 456 YIPQAWKTQCVIPILKPDKAPELASSYRPISLSSCLGKIFETMLKVRLDWYVEANHIIPD 277
Y PQ WK ++ I KP K SSYRPISL +CL K+FE ML +R+ ++ N+ +P
Sbjct: 483 YFPQKWKKSTIVMIPKPGKDKTQPSSYRPISLLTCLSKLFEKMLLLRISPHLRINNTLPT 542
Query: 276 VQYGFRRGRSCADSFISLISDL 211
Q+GFR + + S++
Sbjct: 543 HQFGFREKHGTIEQVNRITSEI 564
>AY060438-1|AAL25477.1| 906|Drosophila melanogaster LD46618p
protein.
Length = 906
Score = 68.1 bits (159), Expect = 1e-11
Identities = 39/127 (30%), Positives = 62/127 (48%), Gaps = 1/127 (0%)
Frame = -1
Query: 615 VEPFTWSEFTISLQSRR-NTTPGMDDYPYLLIKNLDESAQKXXXXXXXXXXXXNYIPQAW 439
++P E +++S +PG+D+ +K L A + P+ W
Sbjct: 434 IKPIRVEEIVEAIKSLPLKKSPGIDNVCNATLKALPVRAILYLALIYNAILRVQFFPKQW 493
Query: 438 KTQCVIPILKPDKAPELASSYRPISLSSCLGKIFETMLKVRLDWYVEANHIIPDVQYGFR 259
K ++ I KP K E SYRPISL S L K++E ++ RL+ + I+PD Q+GFR
Sbjct: 494 KMAAILMIHKPGKPEESPESYRPISLLSSLSKLWERLIANRLNDIMTERRILPDHQFGFR 553
Query: 258 RGRSCAD 238
+G S +
Sbjct: 554 QGHSTVE 560
>U14101-2|AAC46494.1| 1084|Drosophila melanogaster putative reverse
transcriptase protein.
Length = 1084
Score = 66.9 bits (156), Expect = 2e-11
Identities = 49/133 (36%), Positives = 61/133 (45%), Gaps = 1/133 (0%)
Frame = -1
Query: 651 NLNNDNQNSKFLVEPFTWSEFTISLQSRRNT-TPGMDDYPYLLIKNLDESAQKXXXXXXX 475
NLN + N +P T E +++ +N+ PG D LIK L A
Sbjct: 471 NLNKNPHN-----QPITLKELNDEIKNLKNSKAPGKDLITNQLIKTLPTKATLYLILIYN 525
Query: 474 XXXXXNYIPQAWKTQCVIPILKPDKAPELASSYRPISLSSCLGKIFETMLKVRLDWYVEA 295
Y P+AWK V ILKP K+ SYRPISL S L KIFE +L RL
Sbjct: 526 SILRLGYYPEAWKHAQVKMILKPGKSANEPRSYRPISLLSGLSKIFERLLLKRLFKVDLF 585
Query: 294 NHIIPDVQYGFRR 256
IP Q+GFR+
Sbjct: 586 KKAIPLHQFGFRK 598
>AY600955-2|AAT12845.1| 1092|Drosophila melanogaster pol protein
protein.
Length = 1092
Score = 66.5 bits (155), Expect = 3e-11
Identities = 48/133 (36%), Positives = 62/133 (46%), Gaps = 1/133 (0%)
Frame = -1
Query: 651 NLNNDNQNSKFLVEPFTWSEFTISLQSRRNT-TPGMDDYPYLLIKNLDESAQKXXXXXXX 475
NLN + N +P T +E +++ +N+ PG D LIK L A
Sbjct: 483 NLNKNPHN-----QPITLNELNEEIKNLKNSKAPGKDLITNQLIKTLPTKATLYLILIYN 537
Query: 474 XXXXXNYIPQAWKTQCVIPILKPDKAPELASSYRPISLSSCLGKIFETMLKVRLDWYVEA 295
Y P+AWK V ILKP K+ SYRPISL S L K+FE +L RL
Sbjct: 538 SILRLGYYPEAWKHAQVKMILKPGKSSNEPKSYRPISLLSGLSKMFERLLLKRLFRVDLF 597
Query: 294 NHIIPDVQYGFRR 256
IP Q+GFR+
Sbjct: 598 KKAIPLHQFGFRK 610
>AF237761-2|AAF81411.1| 908|Drosophila melanogaster unknown
protein.
Length = 908
Score = 64.9 bits (151), Expect = 1e-10
Identities = 39/136 (28%), Positives = 58/136 (42%), Gaps = 1/136 (0%)
Frame = -1
Query: 615 VEPFTWSEFT-ISLQSRRNTTPGMDDYPYLLIKNLDESAQKXXXXXXXXXXXXNYIPQAW 439
+ PF E + ++ N PG D +K L A Y P W
Sbjct: 433 ITPFEPCEVAEVIVRQSNNKAPGHDVICNATLKALPRQAILYITLVFNAIVRLQYFPYQW 492
Query: 438 KTQCVIPILKPDKAPELASSYRPISLSSCLGKIFETMLKVRLDWYVEANHIIPDVQYGFR 259
K + I KP K +SYRPISL + K+FE ++ VR+ +EA I P+ Q+GFR
Sbjct: 493 KLGIISMIHKPGKPEREPASYRPISLLPSISKVFERLIAVRIVSIMEAQGITPEHQFGFR 552
Query: 258 RGRSCADSFISLISDL 211
G + ++ +
Sbjct: 553 AGHCTVEQLHRVVEQI 568
>U02279-1|AAA18301.1| 964|Drosophila melanogaster protein (
Drosophila melanogastertelomere-associated transposons
TART, TART-A and HeT-A,and TART-A ORF2 gene, partial
cds. ).
Length = 964
Score = 63.7 bits (148), Expect = 2e-10
Identities = 44/120 (36%), Positives = 55/120 (45%), Gaps = 1/120 (0%)
Frame = -1
Query: 612 EPFTWSEFTISLQSRRNT-TPGMDDYPYLLIKNLDESAQKXXXXXXXXXXXXNYIPQAWK 436
+P T E +++ +N+ PG D LIK L A Y P AWK
Sbjct: 363 QPITLKELNDEIKNLKNSKAPGKDLITNQLIKTLPTKATLYLILIYNSILRIGYYPDAWK 422
Query: 435 TQCVIPILKPDKAPELASSYRPISLSSCLGKIFETMLKVRLDWYVEANHIIPDVQYGFRR 256
V ILKP K+ SYRPISL S L K+FE +L RL IP Q+GFR+
Sbjct: 423 HAQVKMILKPGKSVNDPKSYRPISLLSGLSKMFERLLLKRLFRVDLFKKAIPLHQFGFRK 482
>AY561850-2|AAS68534.1| 1080|Drosophila melanogaster pol protein
protein.
Length = 1080
Score = 63.7 bits (148), Expect = 2e-10
Identities = 44/120 (36%), Positives = 55/120 (45%), Gaps = 1/120 (0%)
Frame = -1
Query: 612 EPFTWSEFTISLQSRRNT-TPGMDDYPYLLIKNLDESAQKXXXXXXXXXXXXNYIPQAWK 436
+P T E +++ +N+ PG D LIK L A Y P AWK
Sbjct: 479 QPITLKELNDEIKNLKNSKAPGKDLITNQLIKTLPTKATLYLILIYNSILRIGYYPDAWK 538
Query: 435 TQCVIPILKPDKAPELASSYRPISLSSCLGKIFETMLKVRLDWYVEANHIIPDVQYGFRR 256
V ILKP K+ SYRPISL S L K+FE +L RL IP Q+GFR+
Sbjct: 539 HAQVKMILKPGKSVNDPKSYRPISLLSGLSKMFERLLLKRLFRVDLFKKAIPLHQFGFRK 598
>AM040245-1|CAJ13341.1| 1042|Drosophila melanogaster pol protein
protein.
Length = 1042
Score = 63.7 bits (148), Expect = 2e-10
Identities = 44/120 (36%), Positives = 55/120 (45%), Gaps = 1/120 (0%)
Frame = -1
Query: 612 EPFTWSEFTISLQSRRNT-TPGMDDYPYLLIKNLDESAQKXXXXXXXXXXXXNYIPQAWK 436
+P T E +++ +N+ PG D LIK L A Y P AWK
Sbjct: 441 QPITLKELNDEIKNLKNSKAPGKDLITNQLIKTLPTKATLYLILIYNSILRIGYYPDAWK 500
Query: 435 TQCVIPILKPDKAPELASSYRPISLSSCLGKIFETMLKVRLDWYVEANHIIPDVQYGFRR 256
V ILKP K+ SYRPISL S L K+FE +L RL IP Q+GFR+
Sbjct: 501 HAQVKMILKPGKSVNDPKSYRPISLLSGLSKMFERLLLKRLFRVDLFKKAIPLHQFGFRK 560
>AJ566116-2|CAD92793.1| 1080|Drosophila melanogaster pol protein
protein.
Length = 1080
Score = 63.7 bits (148), Expect = 2e-10
Identities = 44/120 (36%), Positives = 55/120 (45%), Gaps = 1/120 (0%)
Frame = -1
Query: 612 EPFTWSEFTISLQSRRNT-TPGMDDYPYLLIKNLDESAQKXXXXXXXXXXXXNYIPQAWK 436
+P T E +++ +N+ PG D LIK L A Y P AWK
Sbjct: 479 QPITLKELNDEIKNLKNSKAPGKDLITNQLIKTLPTKATLYLILIYNSILRIGYYPDAWK 538
Query: 435 TQCVIPILKPDKAPELASSYRPISLSSCLGKIFETMLKVRLDWYVEANHIIPDVQYGFRR 256
V ILKP K+ SYRPISL S L K+FE +L RL IP Q+GFR+
Sbjct: 539 HAQVKMILKPGKSVNDPKSYRPISLLSGLSKMFERLLLKRLFRVDLFKKAIPLHQFGFRK 598
>AJ278684-2|CAB99192.1| 989|Drosophila melanogaster
endonuclease/reverse transcriptase protein.
Length = 989
Score = 63.7 bits (148), Expect = 2e-10
Identities = 33/116 (28%), Positives = 56/116 (48%)
Frame = -1
Query: 570 RRNTTPGMDDYPYLLIKNLDESAQKXXXXXXXXXXXXNYIPQAWKTQCVIPILKPDKAPE 391
R N PG+D P +++K + + P+ WK ++ +LK
Sbjct: 415 RPNKAPGIDGIPGVIVKAAATARPEVFRDTFQQCLLDGVFPKRWKKMKLVLLLKGKGPAN 474
Query: 390 LASSYRPISLSSCLGKIFETMLKVRLDWYVEANHIIPDVQYGFRRGRSCADSFISL 223
+ SYRP+ L +GK+FE +L R++ E+ + QYGFR+G+S D+ S+
Sbjct: 475 VPRSYRPLCLLDIVGKLFERILYARIELITESPTGLQGQQYGFRKGKSTLDALKSV 530
Score = 29.5 bits (63), Expect = 4.6
Identities = 12/33 (36%), Positives = 15/33 (45%)
Frame = -1
Query: 138 YLARLGIVSNNQCIHCQAEEGTIHHIIFDCQSF 40
YL R V QC++C T HI+ C F
Sbjct: 901 YLCRFRHVDTAQCLYCTDAVETAEHILLHCSRF 933
>AY035777-2|AAK77971.1| 1080|Drosophila melanogaster pol protein
protein.
Length = 1080
Score = 62.9 bits (146), Expect = 4e-10
Identities = 44/120 (36%), Positives = 55/120 (45%), Gaps = 1/120 (0%)
Frame = -1
Query: 612 EPFTWSEFTISLQSRRNT-TPGMDDYPYLLIKNLDESAQKXXXXXXXXXXXXNYIPQAWK 436
+P T E +++ +N+ PG D LIK L A Y P AWK
Sbjct: 479 QPITLKELNDEIKNLKNSKAPGKDLITNQLIKALPTKATLYLILIYNSILRIGYYPDAWK 538
Query: 435 TQCVIPILKPDKAPELASSYRPISLSSCLGKIFETMLKVRLDWYVEANHIIPDVQYGFRR 256
V ILKP K+ SYRPISL S L K+FE +L RL IP Q+GFR+
Sbjct: 539 HAQVKMILKPGKSVNDPKSYRPISLLSGLSKMFERLLLKRLFRVDLFKKAIPLHQFGFRK 598
>AY089343-1|AAL90081.2| 718|Drosophila melanogaster AT16518p
protein.
Length = 718
Score = 60.5 bits (140), Expect = 2e-09
Identities = 36/99 (36%), Positives = 46/99 (46%)
Frame = -1
Query: 555 PGMDDYPYLLIKNLDESAQKXXXXXXXXXXXXNYIPQAWKTQCVIPILKPDKAPELASSY 376
PG D I+ L + A + Y P+AWK+ +I I K K P SY
Sbjct: 258 PGEDLLDNRTIRLLPDQALQFLVLIFNSVLDVGYFPKAWKSASIIMIHKTGKTPTDVDSY 317
Query: 375 RPISLSSCLGKIFETMLKVRLDWYVEANHIIPDVQYGFR 259
RPISL LGKI E ++ RL + IP Q+GFR
Sbjct: 318 RPISLLPSLGKIMERLILNRLLTCKDVTKAIPKFQFGFR 356
>AM040242-2|CAJ13338.1| 1103|Drosophila melanogaster pol protein
protein.
Length = 1103
Score = 60.1 bits (139), Expect = 3e-09
Identities = 43/133 (32%), Positives = 59/133 (44%), Gaps = 1/133 (0%)
Frame = -1
Query: 651 NLNNDNQNSKFLVEPFTWSEFTISLQSRR-NTTPGMDDYPYLLIKNLDESAQKXXXXXXX 475
N + ++ NS F +P T +E + S PG D+ I NL A+
Sbjct: 471 NASGESGNSNF--KPVTLAELNGLINSLELKKAPGTDNLNNKTIINLPTKARIYLILIYN 528
Query: 474 XXXXXNYIPQAWKTQCVIPILKPDKAPELASSYRPISLSSCLGKIFETMLKVRLDWYVEA 295
+ P WK + I KP K+P +SYRPISL S L K+ E +L RL
Sbjct: 529 NILRTGHFPNKWKHASISMIPKPGKSPFALNSYRPISLLSGLSKLLERILPKRLYDIDSF 588
Query: 294 NHIIPDVQYGFRR 256
IP Q+GFR+
Sbjct: 589 AKAIPSHQFGFRK 601
>AM040243-1|CAJ13339.1| 656|Drosophila melanogaster pol protein
protein.
Length = 656
Score = 59.7 bits (138), Expect = 4e-09
Identities = 43/133 (32%), Positives = 59/133 (44%), Gaps = 1/133 (0%)
Frame = -1
Query: 651 NLNNDNQNSKFLVEPFTWSEFTISLQSRR-NTTPGMDDYPYLLIKNLDESAQKXXXXXXX 475
N + ++ NS F +P T +E + S PG D+ I NL A+
Sbjct: 24 NASGESGNSNF--KPVTLAELNGLINSLELKKAPGTDNLNNKTIINLPTKARIYLILIYN 81
Query: 474 XXXXXNYIPQAWKTQCVIPILKPDKAPELASSYRPISLSSCLGKIFETMLKVRLDWYVEA 295
+ P WK + I KP K+P +SYRPISL S L K+ E +L RL
Sbjct: 82 NILRTGHFPNKWKHASISMIPKPGKSPFALNSYRPISLLSGLSKLLERILLKRLYDIDSF 141
Query: 294 NHIIPDVQYGFRR 256
IP Q+GFR+
Sbjct: 142 AKAIPSHQFGFRK 154
>AJ542582-2|CAD65871.1| 1103|Drosophila melanogaster pol protein
protein.
Length = 1103
Score = 59.7 bits (138), Expect = 4e-09
Identities = 43/133 (32%), Positives = 59/133 (44%), Gaps = 1/133 (0%)
Frame = -1
Query: 651 NLNNDNQNSKFLVEPFTWSEFTISLQSRR-NTTPGMDDYPYLLIKNLDESAQKXXXXXXX 475
N + ++ NS F +P T +E + S PG D+ I NL A+
Sbjct: 471 NASGESGNSNF--KPVTLAELNGLINSLELKKAPGTDNLNNKTIINLPTKARIYLILIYN 528
Query: 474 XXXXXNYIPQAWKTQCVIPILKPDKAPELASSYRPISLSSCLGKIFETMLKVRLDWYVEA 295
+ P WK + I KP K+P +SYRPISL S L K+ E +L RL
Sbjct: 529 NILRTGHFPNKWKHASISMIPKPGKSPFALNSYRPISLLSGLSKLLERILLKRLYDIDSF 588
Query: 294 NHIIPDVQYGFRR 256
IP Q+GFR+
Sbjct: 589 AKAIPSHQFGFRK 601
>AJ542581-2|CAD65869.1| 1103|Drosophila melanogaster pol protein
protein.
Length = 1103
Score = 59.7 bits (138), Expect = 4e-09
Identities = 43/133 (32%), Positives = 59/133 (44%), Gaps = 1/133 (0%)
Frame = -1
Query: 651 NLNNDNQNSKFLVEPFTWSEFTISLQSRR-NTTPGMDDYPYLLIKNLDESAQKXXXXXXX 475
N + ++ NS F +P T +E + S PG D+ I NL A+
Sbjct: 471 NASGESGNSNF--KPVTLAELNGLINSLELKKAPGTDNLNNKTIINLPTKARIYLILIYN 528
Query: 474 XXXXXNYIPQAWKTQCVIPILKPDKAPELASSYRPISLSSCLGKIFETMLKVRLDWYVEA 295
+ P WK + I KP K+P +SYRPISL S L K+ E +L RL
Sbjct: 529 NILRTGHFPNKWKHASISMIPKPGKSPFALNSYRPISLLSGLSKLLERILLKRLYDIDSF 588
Query: 294 NHIIPDVQYGFRR 256
IP Q+GFR+
Sbjct: 589 AKAIPSHQFGFRK 601
>AY060323-1|AAL25362.1| 241|Drosophila melanogaster GH20809p
protein.
Length = 241
Score = 58.8 bits (136), Expect = 7e-09
Identities = 27/65 (41%), Positives = 41/65 (63%)
Frame = -1
Query: 456 YIPQAWKTQCVIPILKPDKAPELASSYRPISLSSCLGKIFETMLKVRLDWYVEANHIIPD 277
Y PQ WK +I I KP+K + SYRPISL +CL K+FE L +R+ +++ ++ +P
Sbjct: 25 YFPQKWKKSIIIMIPKPEK-DKTQPSYRPISLLTCLSKLFEKGLLLRISPHLKTHNTLPS 83
Query: 276 VQYGF 262
Q+ F
Sbjct: 84 YQFDF 88
>M22874-2|AAA28675.1| 916|Drosophila melanogaster protein (
D.melanogaster LINEelement J-1, clone J-1. ).
Length = 916
Score = 58.4 bits (135), Expect = 9e-09
Identities = 35/99 (35%), Positives = 45/99 (45%)
Frame = -1
Query: 555 PGMDDYPYLLIKNLDESAQKXXXXXXXXXXXXNYIPQAWKTQCVIPILKPDKAPELASSY 376
PG D I+ L + A + Y P+AWK+ +I I K K P SY
Sbjct: 456 PGEDLLDNRTIRLLPDQALQFLALIFNSVLDVGYFPKAWKSASIIMIHKTGKTPTDVDSY 515
Query: 375 RPISLSSCLGKIFETMLKVRLDWYVEANHIIPDVQYGFR 259
RP SL LGKI E ++ RL + IP Q+GFR
Sbjct: 516 RPTSLLPSLGKIMERLILNRLLTCKDVTKAIPKFQFGFR 554
>X51968-2|CAA36227.1| 1021|Drosophila melanogaster protein (
Drosophila melanogasterDNA for type I retrotransposable
element R1Dm. ).
Length = 1021
Score = 47.2 bits (107), Expect = 2e-05
Identities = 40/149 (26%), Positives = 65/149 (43%), Gaps = 4/149 (2%)
Frame = -1
Query: 615 VEPFTWSEFTISLQSRRNTTPGMDDYPYLLIKNLDESAQKXXXXXXXXXXXXNYIPQAWK 436
+E F L+SRR+ PG+D + K + + + Y P WK
Sbjct: 434 LEVFEVDTCVARLKSRRS--PGLDGINGTICKAVWRAIPEHLASLFSRCIRLGYFPAEWK 491
Query: 435 TQCVIPILK-PDKAPELASSYRPISLSSCLGKIFETMLKVRLDWYVEANHIIPD---VQY 268
V+ +LK PDK SSYR I L GK+ E ++ R+ ++P+ Q+
Sbjct: 492 CPRVVSLLKGPDKDKCEPSSYRGICLLPVFGKVLEAIMVNRV------REVLPEGCRWQF 545
Query: 267 GFRRGRSCADSFISLISDLDITPPSLLTG 181
GFR+GR D++ + S + + + G
Sbjct: 546 GFRQGRCVEDAWRHVKSSVGASAAQYVLG 574
>AY061560-1|AAL29108.1| 510|Drosophila melanogaster LP10922p
protein.
Length = 510
Score = 30.7 bits (66), Expect = 2.0
Identities = 17/54 (31%), Positives = 29/54 (53%)
Frame = -1
Query: 450 PQAWKTQCVIPILKPDKAPELASSYRPISLSSCLGKIFETMLKVRLDWYVEANH 289
PQ W Q ++P L+PDK EL + + + L +I E +V + + V+ +H
Sbjct: 42 PQKWDKQKIVPFLQPDKLKELINLKVRETENCSLAEIEELCQQV-IHYSVKTSH 94
>AE014296-3336|AAF51576.1| 510|Drosophila melanogaster CG5618-PA,
isoform A protein.
Length = 510
Score = 30.7 bits (66), Expect = 2.0
Identities = 17/54 (31%), Positives = 29/54 (53%)
Frame = -1
Query: 450 PQAWKTQCVIPILKPDKAPELASSYRPISLSSCLGKIFETMLKVRLDWYVEANH 289
PQ W Q ++P L+PDK EL + + + L +I E +V + + V+ +H
Sbjct: 42 PQKWDKQKIVPFLQPDKLKELINLKVRETENCSLAEIEELCQQV-IHYSVKTSH 94
>AE014134-2811|AAF53590.3| 1876|Drosophila melanogaster CG4841-PA
protein.
Length = 1876
Score = 29.1 bits (62), Expect = 6.1
Identities = 10/21 (47%), Positives = 16/21 (76%)
Frame = -2
Query: 449 HRHGKHSVLFRYSNQTRHQNL 387
H H +HS+L +YS Q ++QN+
Sbjct: 258 HEHAQHSLLSQYSGQHQNQNM 278
>X51548-1|CAA35923.1| 1237|Drosophila melanogaster protein (
Drosophila mRNA forecdysone-inducible gene E75A. ).
Length = 1237
Score = 28.7 bits (61), Expect = 8.0
Identities = 13/41 (31%), Positives = 23/41 (56%)
Frame = -1
Query: 237 SFISLISDLDITPPSLLTGITLLNKYTPPLSIIYLARLGIV 115
S ++ ++DLD PP TG+T+ + P S + L G++
Sbjct: 83 SLVAPVTDLDTVPP---TGVTMASSSNSPNSSVKLPHSGVI 120
>AE014296-2990|AAN11687.1| 1199|Drosophila melanogaster CG8127-PC,
isoform C protein.
Length = 1199
Score = 28.7 bits (61), Expect = 8.0
Identities = 13/41 (31%), Positives = 23/41 (56%)
Frame = -1
Query: 237 SFISLISDLDITPPSLLTGITLLNKYTPPLSIIYLARLGIV 115
S ++ ++DLD PP TG+T+ + P S + L G++
Sbjct: 83 SLVAPVTDLDTVPP---TGVTMASSSNSPNSSVKLPHSGVI 120
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 29,089,580
Number of Sequences: 53049
Number of extensions: 579359
Number of successful extensions: 1005
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 980
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 997
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3067209849
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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