Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc20c04
         (699 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF100669-1|AAK39265.1|  931|Caenorhabditis elegans Hypothetical ...    56   3e-08
U58735-1|AAC48148.1|  891|Caenorhabditis elegans Hypothetical pr...    36   0.028
AF054983-1|AAC72298.1| 1066|Caenorhabditis elegans reverse trans...    36   0.028
AF025462-7|AAB71003.1|  805|Caenorhabditis elegans Hypothetical ...    36   0.028
U41036-9|ABA61867.1|  245|Caenorhabditis elegans Dopamine recept...    28   7.4  
U41036-8|ABA61866.1|  590|Caenorhabditis elegans Dopamine recept...    28   7.4  
U41036-7|ABA61865.1|  607|Caenorhabditis elegans Dopamine recept...    28   7.4  
U41036-6|ABA61864.1|  605|Caenorhabditis elegans Dopamine recept...    28   7.4  
AY485309-1|AAR37416.1|  607|Caenorhabditis elegans DOP-3 protein.      28   7.4  
AL032653-3|CAA21713.1|  861|Caenorhabditis elegans Hypothetical ...    27   9.8  

>AF100669-1|AAK39265.1|  931|Caenorhabditis elegans Hypothetical
           protein R11E3.3 protein.
          Length = 931

 Score = 55.6 bits (128), Expect = 3e-08
 Identities = 32/81 (39%), Positives = 45/81 (55%)
 Frame = -1

Query: 453 IPQAWKTQCVIPILKPDKAPELASSYRPISLSSCLGKIFETMLKVRLDWYVEANHIIPDV 274
           IP  WK   VI I KP K P +ASSYRPISL S + K+ E  +  R+   +E+    P  
Sbjct: 380 IPDKWKKANVIMIPKPKKDPAIASSYRPISLLSPIAKLLEKAILKRIKNSIES----PAH 435

Query: 273 QYGFRRGRSCADSFISLISDL 211
           Q+GF+   S   + I + +D+
Sbjct: 436 QHGFKPEHSTTTAVIQVTNDI 456


>U58735-1|AAC48148.1|  891|Caenorhabditis elegans Hypothetical
           protein F20B4.7 protein.
          Length = 891

 Score = 35.9 bits (79), Expect = 0.028
 Identities = 28/83 (33%), Positives = 37/83 (44%)
 Frame = -1

Query: 453 IPQAWKTQCVIPILKPDKAPELASSYRPISLSSCLGKIFETMLKVRLDWYVEANHIIPDV 274
           +P+ WKT     I K      L  +YRPI L   L K+F   L  R+   ++     P  
Sbjct: 428 VPKPWKTSKTTLIFKKGDRENL-ENYRPICLLPVLYKVFTKCLLNRMRRSLDEAQ--PVE 484

Query: 273 QYGFRRGRSCADSFISLISDLDI 205
           Q GFRR  S  D   SL   L++
Sbjct: 485 QAGFRRSFSTIDHIHSLQRLLEV 507


>AF054983-1|AAC72298.1| 1066|Caenorhabditis elegans reverse
           transcriptase protein.
          Length = 1066

 Score = 35.9 bits (79), Expect = 0.028
 Identities = 28/83 (33%), Positives = 37/83 (44%)
 Frame = -1

Query: 453 IPQAWKTQCVIPILKPDKAPELASSYRPISLSSCLGKIFETMLKVRLDWYVEANHIIPDV 274
           +P+ WKT     I K      L  +YRPI L   L K+F   L  R+   ++     P  
Sbjct: 599 VPKPWKTSKTTLIFKKGDRENL-ENYRPICLLPVLYKVFTKCLLNRMRRSLDEAQ--PVE 655

Query: 273 QYGFRRGRSCADSFISLISDLDI 205
           Q GFRR  S  D   SL   L++
Sbjct: 656 QAGFRRSFSTIDHIHSLQRLLEV 678


>AF025462-7|AAB71003.1|  805|Caenorhabditis elegans Hypothetical
           protein K10F12.5 protein.
          Length = 805

 Score = 35.9 bits (79), Expect = 0.028
 Identities = 28/83 (33%), Positives = 37/83 (44%)
 Frame = -1

Query: 453 IPQAWKTQCVIPILKPDKAPELASSYRPISLSSCLGKIFETMLKVRLDWYVEANHIIPDV 274
           +P+ WKT     I K      L  +YRPI L   L K+F   L  R+   ++     P  
Sbjct: 338 VPKPWKTSKTTLIFKKGDRENL-ENYRPICLLPVLYKVFTKCLLNRMRRSLDEAQ--PVE 394

Query: 273 QYGFRRGRSCADSFISLISDLDI 205
           Q GFRR  S  D   SL   L++
Sbjct: 395 QAGFRRSFSTIDHIHSLQRLLEV 417


>U41036-9|ABA61867.1|  245|Caenorhabditis elegans Dopamine receptor
           protein 3, isoformd protein.
          Length = 245

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 14/44 (31%), Positives = 22/44 (50%)
 Frame = -1

Query: 378 YRPISLSSCLGKIFETMLKVRLDWYVEANHIIPDVQYGFRRGRS 247
           Y+ + ++     I   +L + LD Y+   H I   QYG R GR+
Sbjct: 83  YQALDVACSTASILN-LLAISLDRYIAIGHPISYAQYGARGGRA 125


>U41036-8|ABA61866.1|  590|Caenorhabditis elegans Dopamine receptor
           protein 3, isoformc protein.
          Length = 590

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 14/44 (31%), Positives = 22/44 (50%)
 Frame = -1

Query: 378 YRPISLSSCLGKIFETMLKVRLDWYVEANHIIPDVQYGFRRGRS 247
           Y+ + ++     I   +L + LD Y+   H I   QYG R GR+
Sbjct: 83  YQALDVACSTASILN-LLAISLDRYIAIGHPISYAQYGARGGRA 125


>U41036-7|ABA61865.1|  607|Caenorhabditis elegans Dopamine receptor
           protein 3, isoformb protein.
          Length = 607

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 14/44 (31%), Positives = 22/44 (50%)
 Frame = -1

Query: 378 YRPISLSSCLGKIFETMLKVRLDWYVEANHIIPDVQYGFRRGRS 247
           Y+ + ++     I   +L + LD Y+   H I   QYG R GR+
Sbjct: 98  YQALDVACSTASILN-LLAISLDRYIAIGHPISYAQYGARGGRA 140


>U41036-6|ABA61864.1|  605|Caenorhabditis elegans Dopamine receptor
           protein 3, isoforma protein.
          Length = 605

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 14/44 (31%), Positives = 22/44 (50%)
 Frame = -1

Query: 378 YRPISLSSCLGKIFETMLKVRLDWYVEANHIIPDVQYGFRRGRS 247
           Y+ + ++     I   +L + LD Y+   H I   QYG R GR+
Sbjct: 98  YQALDVACSTASILN-LLAISLDRYIAIGHPISYAQYGARGGRA 140


>AY485309-1|AAR37416.1|  607|Caenorhabditis elegans DOP-3 protein.
          Length = 607

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 14/44 (31%), Positives = 22/44 (50%)
 Frame = -1

Query: 378 YRPISLSSCLGKIFETMLKVRLDWYVEANHIIPDVQYGFRRGRS 247
           Y+ + ++     I   +L + LD Y+   H I   QYG R GR+
Sbjct: 98  YQALDVACSTASILN-LLAISLDRYIAIGHPISYAQYGARGGRA 140


>AL032653-3|CAA21713.1|  861|Caenorhabditis elegans Hypothetical
           protein Y54E5B.2 protein.
          Length = 861

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 9/23 (39%), Positives = 18/23 (78%)
 Frame = +1

Query: 79  FFCLTVYTLVI*NNAKSC*IYYG 147
           +F  ++ +L+I N+A+SC +Y+G
Sbjct: 94  YFATSICSLIIGNSAESCHVYFG 116


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,282,607
Number of Sequences: 27780
Number of extensions: 314497
Number of successful extensions: 704
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 647
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 704
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1613473434
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)