Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc20c03
         (668 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC17G9.09 |tif213||translation initiation factor eIF2 gamma su...    30   0.35 
SPCC1450.10c |||iron hydrogenase large subunit |Schizosaccharomy...    28   1.1  
SPCC965.03 |vma8||V-type ATPase subunit D |Schizosaccharomyces p...    28   1.4  
SPCC569.04 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||...    27   3.2  
SPBC56F2.07c |||AAA family ATPase, unknown biological role|Schiz...    26   4.3  
SPCC330.09 |||rRNA processing protein Enp2 |Schizosaccharomyces ...    25   7.5  
SPCC1902.01 |gaf1|SPCC417.01c|transcription factor Gaf1 |Schizos...    25   9.9  
SPBP23A10.14c |ell1||RNA polymerase II transcription elongation ...    25   9.9  
SPBC216.02 |mcp5|num1, mug21|cortical anchoring factor for dynei...    25   9.9  

>SPBC17G9.09 |tif213||translation initiation factor eIF2 gamma
           subunit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 446

 Score = 29.9 bits (64), Expect = 0.35
 Identities = 18/77 (23%), Positives = 36/77 (46%), Gaps = 7/77 (9%)
 Frame = +3

Query: 108 NGDRNTA-VPMITKD---VEKVSTPAPGVGKVLIREDT---VLTVPGCTSCGRGQFTCSG 266
           +GD+NT  V  + K+   +  + + + G   ++++ D    +LT P CT  G        
Sbjct: 366 SGDKNTTKVQKLAKNEVLMVNIGSTSTGGRVMMVKADMAKILLTAPACTEIGEKVALSRR 425

Query: 267 VQKQWSALCWGQQSDKK 317
           ++K W  + W +  + K
Sbjct: 426 IEKHWRLIGWAKVVEGK 442


>SPCC1450.10c |||iron hydrogenase large subunit |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 538

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 15/38 (39%), Positives = 19/38 (50%)
 Frame = +3

Query: 210 VLTVPGCTSCGRGQFTCSGVQKQWSALCWGQQSDKKYY 323
           V+  PG    G GQ     V++  SA  W QQ +K YY
Sbjct: 450 VMACPGGCINGGGQLPFPSVERIVSARDWMQQVEKLYY 487


>SPCC965.03 |vma8||V-type ATPase subunit D |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 285

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 18/50 (36%), Positives = 25/50 (50%)
 Frame = +3

Query: 54  RKSQNNAKGSLDLNMENLNGDRNTAVPMITKDVEKVSTPAPGVGKVLIRE 203
           +K++ NA+ +  +  E   G  NT     TKDV     PA  VGK +I E
Sbjct: 208 QKTKENAEKADSVTKEEHQGGSNTLQQ--TKDVGGAIAPAAEVGKEVINE 255


>SPCC569.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 121

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 8/23 (34%), Positives = 18/23 (78%)
 Frame = +3

Query: 519 EQVRDGDEKKLHVEEVGPYVYSL 587
           ++ R G+ +K+ ++E+ PY+YS+
Sbjct: 8   DENRKGENRKVEIQELVPYLYSV 30


>SPBC56F2.07c |||AAA family ATPase, unknown biological
           role|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 809

 Score = 26.2 bits (55), Expect = 4.3
 Identities = 22/88 (25%), Positives = 38/88 (43%)
 Frame = +3

Query: 387 FTNTINDAILSNMIIRNNSMAFSLWEHPTVEPLMKVYLFNYTNWEQVRDGDEKKLHVEEV 566
           FT  IND  L     R+  ++ +      + P   +YL  +   E V  G  + +    +
Sbjct: 7   FTVKINDGSLRRQQTRHVFLSPAALNRLKLSPSQVIYL-KHKGGEAV--GITQSVKGNGI 63

Query: 567 GPYVYSLSPALLTLANCRDEKTLNGSSF 650
           GP+   +SP L   AN +  + +N S +
Sbjct: 64  GPFEILISPLLAKWANLKAFQRVNISQY 91


>SPCC330.09 |||rRNA processing protein Enp2 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 634

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 15/46 (32%), Positives = 26/46 (56%)
 Frame = -1

Query: 317 FFIRLLSPAERRPLFLDSGTRELASPAASTAWHGQHRVLSDQDLPN 180
           F+I  L+PA R   FLD+ T E+    A T  +  ++ ++ ++L N
Sbjct: 351 FYIPSLNPAPRWCSFLDNITEEMEENPAPTI-YDDYKFVTKKELLN 395


>SPCC1902.01 |gaf1|SPCC417.01c|transcription factor Gaf1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 855

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 10/26 (38%), Positives = 18/26 (69%)
 Frame = -2

Query: 181 TPGAGVETFSTSFVIIGTAVFLSPLR 104
           +P  G + FS  F+ +GTA+ ++P+R
Sbjct: 474 SPLPGSDMFSPQFMRVGTAMGVAPVR 499


>SPBP23A10.14c |ell1||RNA polymerase II transcription elongation
           factor SpELL|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 533

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 9/35 (25%), Positives = 20/35 (57%)
 Frame = -1

Query: 308 RLLSPAERRPLFLDSGTRELASPAASTAWHGQHRV 204
           +L  P    P F+D+ +  + S ++ +++  QHR+
Sbjct: 311 QLAQPTSHVPSFIDTNSPSMPSISSVSSYQQQHRI 345


>SPBC216.02 |mcp5|num1, mug21|cortical anchoring factor for dynein
           Mcp5/Num1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 968

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 8/28 (28%), Positives = 19/28 (67%)
 Frame = +3

Query: 366 IGTIFSCFTNTINDAILSNMIIRNNSMA 449
           I ++FS   N +ND   +++I+R ++++
Sbjct: 586 ISSVFSLIKNEVNDTSANSVILRTDALS 613


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,866,479
Number of Sequences: 5004
Number of extensions: 59750
Number of successful extensions: 191
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 186
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 191
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 305854096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)