Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc20c03
         (668 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0975 + 33227431-33227730,33228556-33228636,33228883-332296...    31   0.63 
12_02_1049 + 25681284-25681349,25684409-25684627,25684720-256849...    31   1.1  
12_01_0491 - 3884764-3885114,3885143-3885403,3885493-3885711,388...    31   1.1  
06_03_1189 + 28271185-28271394,28272421-28273326                       29   4.4  
08_01_0180 - 1524302-1524877,1525998-1527056                           28   5.9  
04_04_0779 - 28023735-28024058,28024520-28024618,28024704-280249...    28   7.7  
01_06_0101 + 26443080-26443172,26444063-26445139,26445226-26445804     28   7.7  
01_03_0282 - 14580875-14580891,14582126-14585855                       28   7.7  

>02_05_0975 +
           33227431-33227730,33228556-33228636,33228883-33229680,
           33230829-33231005,33231159-33231274,33231422-33231520,
           33231598-33232040,33232147-33232184,33232343-33232600,
           33233378-33233525,33233989-33234108,33234884-33234984,
           33235090-33235213,33235386-33235498,33236103-33236214,
           33236298-33236432,33236527-33236593,33236685-33236741,
           33236774-33236900,33237221-33237338,33237418-33237929
          Length = 1347

 Score = 31.5 bits (68), Expect = 0.63
 Identities = 14/50 (28%), Positives = 27/50 (54%)
 Frame = +3

Query: 27  VDAPQRATNRKSQNNAKGSLDLNMENLNGDRNTAVPMITKDVEKVSTPAP 176
           +D  +R    ++ + +      N  N N +++T+ P+ TK+V+ V TP P
Sbjct: 654 IDQSKRTLTGRADSLSTSERIANAANRNRNQHTSHPIETKEVDSVCTPCP 703


>12_02_1049 +
           25681284-25681349,25684409-25684627,25684720-25684980,
           25685060-25685362
          Length = 282

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 16/51 (31%), Positives = 23/51 (45%), Gaps = 3/51 (5%)
 Frame = +3

Query: 159 VSTPAPGVGKVLIREDTV---LTVPGCTSCGRGQFTCSGVQKQWSALCWGQ 302
           + + + G   V ++ D     LT P CTS G        V+K W  + WGQ
Sbjct: 218 IGSMSTGARVVAVKNDLAKLQLTAPVCTSKGEKVALSRRVEKHWRLIGWGQ 268


>12_01_0491 -
           3884764-3885114,3885143-3885403,3885493-3885711,
           3885792-3886019,3886378-3886480,3886703-3886815,
           3887262-3887323,3887915-3888104
          Length = 508

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 16/51 (31%), Positives = 23/51 (45%), Gaps = 3/51 (5%)
 Frame = +3

Query: 159 VSTPAPGVGKVLIREDTV---LTVPGCTSCGRGQFTCSGVQKQWSALCWGQ 302
           + + + G   V ++ D     LT P CTS G        V+K W  + WGQ
Sbjct: 444 IGSMSTGARVVAVKNDLAKLQLTAPVCTSKGEKVALSRRVEKHWRLIGWGQ 494


>06_03_1189 + 28271185-28271394,28272421-28273326
          Length = 371

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 18/48 (37%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
 Frame = -1

Query: 323 VIFFIRLLSPAERRPLFLDSGTREL-ASPAASTAWHGQHRVLSDQDLP 183
           V+  + +L P ++RP  ++   REL A  AA+ +W G H V  D +LP
Sbjct: 245 VLVAVGILRPFDKRPDRMEYMRRELEAEAAAAWSWPG-HHVGLDLNLP 291


>08_01_0180 - 1524302-1524877,1525998-1527056
          Length = 544

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 23/57 (40%), Positives = 28/57 (49%)
 Frame = -1

Query: 395 ICEAREYRPDQTQNEGCRQND*QRVIFFIRLLSPAERRPLFLDSGTRELASPAASTA 225
           IC AR     +T+ E   QN   RV   I L SPA   PLF D  +R +  PA + A
Sbjct: 347 ICPARA---KETEGE---QNFMHRVHIIITLSSPASFEPLF-DKASRRVFHPAVAFA 396


>04_04_0779 -
           28023735-28024058,28024520-28024618,28024704-28024940,
           28025227-28025334,28025427-28025486,28025813-28025888,
           28025984-28026144,28026374-28026436,28026543-28026630,
           28026872-28027612,28027695-28028239
          Length = 833

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 18/58 (31%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
 Frame = +3

Query: 9   LGPRSGVDAPQRATNRKSQNNAKGSLDLNMENLNGDRNTAVPMITKDVEKVSTP-APG 179
           L PRSG  AP+  TNR      K +  L +  L+   ++  P  +     +S P +PG
Sbjct: 340 LHPRSGGMAPESPTNRHDDGKKKQTHKLPLPPLSISHSSFHPNNSTPTSPISVPRSPG 397


>01_06_0101 + 26443080-26443172,26444063-26445139,26445226-26445804
          Length = 582

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 11/37 (29%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
 Frame = -3

Query: 657 HPKTSFHLVFSRHDNWLMLVKP--AITNKHMVRLLRR 553
           H  T  + + +RH+ W+  ++P  AI  ++  R +RR
Sbjct: 119 HKLTDIYAIKARHERWMTTIRPLTAILERYERRAMRR 155


>01_03_0282 - 14580875-14580891,14582126-14585855
          Length = 1248

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 13/29 (44%), Positives = 20/29 (68%)
 Frame = -3

Query: 363  NSERRLSTERLAACNIFYPTAVPSRAPTI 277
            NSE  ++  +L  CN+F+PT  PS+ PT+
Sbjct: 942  NSEASVTEMKLDGCNMFFPT-TPSK-PTV 968


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,649,173
Number of Sequences: 37544
Number of extensions: 433045
Number of successful extensions: 1279
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1239
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1278
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1691314196
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)