Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc20c03
(668 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
D12676-1|BAA02177.1| 478|Homo sapiens 85kDa lysosomal sialoglyc... 54 6e-07
BT006939-1|AAP35585.1| 478|Homo sapiens scavenger receptor clas... 54 6e-07
BC021892-1|AAH21892.1| 478|Homo sapiens scavenger receptor clas... 54 6e-07
Z22555-1|CAA80277.1| 509|Homo sapiens CLA-1 protein. 41 0.003
BC112037-1|AAI12038.1| 509|Homo sapiens scavenger receptor clas... 41 0.003
BC093732-1|AAH93732.1| 509|Homo sapiens scavenger receptor clas... 41 0.003
BC080647-1|AAH80647.1| 509|Homo sapiens scavenger receptor clas... 41 0.003
AB209436-1|BAD92673.1| 581|Homo sapiens Scavenger receptor clas... 41 0.003
AM040553-1|CAJ13461.1| 124|Homo sapiens immunoglobulin heavy ch... 34 0.53
AF398952-1|AAL13255.1| 124|Homo sapiens immunoglobulin heavy ch... 34 0.53
AF011793-1|AAB69313.1| 415|Homo sapiens Dnj3/Cpr3 protein. 33 1.2
U00520-1|AAA17932.1| 125|Homo sapiens immunoglobulin heavy chai... 32 1.6
BX936346-2|CAI43227.1| 2639|Homo sapiens filamin A, alpha (actin... 30 6.5
BX936346-1|CAI43226.1| 2607|Homo sapiens filamin A, alpha (actin... 30 6.5
BX664723-2|CAI43199.1| 2639|Homo sapiens filamin A, alpha (actin... 30 6.5
BX664723-1|CAI43198.1| 2607|Homo sapiens filamin A, alpha (actin... 30 6.5
AK090427-1|BAC03408.1| 2651|Homo sapiens FLJ00343 protein protein. 30 6.5
AK074048-1|BAB84874.1| 1455|Homo sapiens FLJ00119 protein protein. 30 6.5
AB191259-1|BAD52435.1| 2612|Homo sapiens filamin A protein. 30 6.5
>D12676-1|BAA02177.1| 478|Homo sapiens 85kDa lysosomal
sialoglycoprotein protein.
Length = 478
Score = 53.6 bits (123), Expect = 6e-07
Identities = 24/65 (36%), Positives = 37/65 (56%)
Frame = +3
Query: 387 FTNTINDAILSNMIIRNNSMAFSLWEHPTVEPLMKVYLFNYTNWEQVRDGDEKKLHVEEV 566
F ++ +I +++RN + AF WE P + + Y FN TN E++ G+ + VEEV
Sbjct: 29 FQKAVDQSIEKKIVLRNGTEAFDSWEKPPLPVYTQFYFFNVTNPEEILRGETPR--VEEV 86
Query: 567 GPYVY 581
GPY Y
Sbjct: 87 GPYTY 91
>BT006939-1|AAP35585.1| 478|Homo sapiens scavenger receptor class
B, member 2 protein.
Length = 478
Score = 53.6 bits (123), Expect = 6e-07
Identities = 24/65 (36%), Positives = 37/65 (56%)
Frame = +3
Query: 387 FTNTINDAILSNMIIRNNSMAFSLWEHPTVEPLMKVYLFNYTNWEQVRDGDEKKLHVEEV 566
F ++ +I +++RN + AF WE P + + Y FN TN E++ G+ + VEEV
Sbjct: 29 FQKAVDQSIEKKIVLRNGTEAFDSWEKPPLPVYTQFYFFNVTNPEEILRGETPR--VEEV 86
Query: 567 GPYVY 581
GPY Y
Sbjct: 87 GPYTY 91
>BC021892-1|AAH21892.1| 478|Homo sapiens scavenger receptor class
B, member 2 protein.
Length = 478
Score = 53.6 bits (123), Expect = 6e-07
Identities = 24/65 (36%), Positives = 37/65 (56%)
Frame = +3
Query: 387 FTNTINDAILSNMIIRNNSMAFSLWEHPTVEPLMKVYLFNYTNWEQVRDGDEKKLHVEEV 566
F ++ +I +++RN + AF WE P + + Y FN TN E++ G+ + VEEV
Sbjct: 29 FQKAVDQSIEKKIVLRNGTEAFDSWEKPPLPVYTQFYFFNVTNPEEILRGETPR--VEEV 86
Query: 567 GPYVY 581
GPY Y
Sbjct: 87 GPYTY 91
>Z22555-1|CAA80277.1| 509|Homo sapiens CLA-1 protein.
Length = 509
Score = 41.1 bits (92), Expect = 0.003
Identities = 20/61 (32%), Positives = 34/61 (55%)
Frame = +3
Query: 399 INDAILSNMIIRNNSMAFSLWEHPTVEPLMKVYLFNYTNWEQVRDGDEKKLHVEEVGPYV 578
I +L N+ I +S++F++W+ + + VY F+ N ++ G+ K V E GPYV
Sbjct: 36 IKQQVLKNVRIDPSSLSFNMWKEIPIPFYLSVYFFDVMNPSEILKGE--KPQVRERGPYV 93
Query: 579 Y 581
Y
Sbjct: 94 Y 94
>BC112037-1|AAI12038.1| 509|Homo sapiens scavenger receptor class
B, member 1 protein.
Length = 509
Score = 41.1 bits (92), Expect = 0.003
Identities = 20/61 (32%), Positives = 34/61 (55%)
Frame = +3
Query: 399 INDAILSNMIIRNNSMAFSLWEHPTVEPLMKVYLFNYTNWEQVRDGDEKKLHVEEVGPYV 578
I +L N+ I +S++F++W+ + + VY F+ N ++ G+ K V E GPYV
Sbjct: 36 IKQQVLKNVRIDPSSLSFNMWKEIPIPFYLSVYFFDVMNPSEILKGE--KPQVRERGPYV 93
Query: 579 Y 581
Y
Sbjct: 94 Y 94
>BC093732-1|AAH93732.1| 509|Homo sapiens scavenger receptor class
B, member 1 protein.
Length = 509
Score = 41.1 bits (92), Expect = 0.003
Identities = 20/61 (32%), Positives = 34/61 (55%)
Frame = +3
Query: 399 INDAILSNMIIRNNSMAFSLWEHPTVEPLMKVYLFNYTNWEQVRDGDEKKLHVEEVGPYV 578
I +L N+ I +S++F++W+ + + VY F+ N ++ G+ K V E GPYV
Sbjct: 36 IKQQVLKNVRIDPSSLSFNMWKEIPIPFYLSVYFFDVMNPSEILKGE--KPQVRERGPYV 93
Query: 579 Y 581
Y
Sbjct: 94 Y 94
>BC080647-1|AAH80647.1| 509|Homo sapiens scavenger receptor class
B, member 1 protein.
Length = 509
Score = 41.1 bits (92), Expect = 0.003
Identities = 20/61 (32%), Positives = 34/61 (55%)
Frame = +3
Query: 399 INDAILSNMIIRNNSMAFSLWEHPTVEPLMKVYLFNYTNWEQVRDGDEKKLHVEEVGPYV 578
I +L N+ I +S++F++W+ + + VY F+ N ++ G+ K V E GPYV
Sbjct: 36 IKQQVLKNVRIDPSSLSFNMWKEIPIPFYLSVYFFDVMNPSEILKGE--KPQVRERGPYV 93
Query: 579 Y 581
Y
Sbjct: 94 Y 94
>AB209436-1|BAD92673.1| 581|Homo sapiens Scavenger receptor class B
member 1 variant protein.
Length = 581
Score = 41.1 bits (92), Expect = 0.003
Identities = 20/61 (32%), Positives = 34/61 (55%)
Frame = +3
Query: 399 INDAILSNMIIRNNSMAFSLWEHPTVEPLMKVYLFNYTNWEQVRDGDEKKLHVEEVGPYV 578
I +L N+ I +S++F++W+ + + VY F+ N ++ G+ K V E GPYV
Sbjct: 64 IKQQVLKNVRIDPSSLSFNMWKEIPIPFYLSVYFFDVMNPSEILKGE--KPQVRERGPYV 121
Query: 579 Y 581
Y
Sbjct: 122 Y 122
>AM040553-1|CAJ13461.1| 124|Homo sapiens immunoglobulin heavy chain
variable region protein.
Length = 124
Score = 33.9 bits (74), Expect = 0.53
Identities = 19/38 (50%), Positives = 23/38 (60%)
Frame = +3
Query: 60 SQNNAKGSLDLNMENLNGDRNTAVPMITKDVEKVSTPA 173
S++NAK SL L M NL GD +TAV V S+PA
Sbjct: 71 SRDNAKNSLHLQMNNLRGD-DTAVYYCATTVPSASSPA 107
>AF398952-1|AAL13255.1| 124|Homo sapiens immunoglobulin heavy chain
variable region protein.
Length = 124
Score = 33.9 bits (74), Expect = 0.53
Identities = 19/38 (50%), Positives = 23/38 (60%)
Frame = +3
Query: 60 SQNNAKGSLDLNMENLNGDRNTAVPMITKDVEKVSTPA 173
S++NAK SL L M NL GD +TAV V S+PA
Sbjct: 71 SRDNAKNSLHLQMNNLRGD-DTAVYYCATTVPSASSPA 107
>AF011793-1|AAB69313.1| 415|Homo sapiens Dnj3/Cpr3 protein.
Length = 415
Score = 32.7 bits (71), Expect = 1.2
Identities = 17/57 (29%), Positives = 29/57 (50%)
Frame = -1
Query: 386 AREYRPDQTQNEGCRQND*QRVIFFIRLLSPAERRPLFLDSGTRELASPAASTAWHG 216
A+EY PD+ N ++ + + + F +LS E+R L+ G + L + WHG
Sbjct: 32 AKEYHPDK--NPQMQETNFKEISFAYEVLSNPEKRELYDRYGEQGLREGSGGGGWHG 86
>U00520-1|AAA17932.1| 125|Homo sapiens immunoglobulin heavy chain
variable region protein.
Length = 125
Score = 32.3 bits (70), Expect = 1.6
Identities = 18/40 (45%), Positives = 24/40 (60%)
Frame = +3
Query: 60 SQNNAKGSLDLNMENLNGDRNTAVPMITKDVEKVSTPAPG 179
S++NAK SLDL M +L D +TAV +DV + PG
Sbjct: 70 SRDNAKNSLDLQMTSLR-DEDTAVYYCARDVYVEAETGPG 108
>BX936346-2|CAI43227.1| 2639|Homo sapiens filamin A, alpha (actin
binding protein 280) protein.
Length = 2639
Score = 30.3 bits (65), Expect = 6.5
Identities = 19/50 (38%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
Frame = +3
Query: 117 RNTAVPMITKDVEKVSTPAPGVGKVL-IREDTVLTVPGCTSCGRGQFTCS 263
R AVP T D K + G+G + I E+TV+TV + G+G+ TC+
Sbjct: 1633 RVRAVP--TGDASKCTVTGAGIGPTIQIGEETVITVD-TKAAGKGKVTCT 1679
>BX936346-1|CAI43226.1| 2607|Homo sapiens filamin A, alpha (actin
binding protein 280) protein.
Length = 2607
Score = 30.3 bits (65), Expect = 6.5
Identities = 19/50 (38%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
Frame = +3
Query: 117 RNTAVPMITKDVEKVSTPAPGVGKVL-IREDTVLTVPGCTSCGRGQFTCS 263
R AVP T D K + G+G + I E+TV+TV + G+G+ TC+
Sbjct: 1633 RVRAVP--TGDASKCTVTGAGIGPTIQIGEETVITVD-TKAAGKGKVTCT 1679
>BX664723-2|CAI43199.1| 2639|Homo sapiens filamin A, alpha (actin
binding protein 280) protein.
Length = 2639
Score = 30.3 bits (65), Expect = 6.5
Identities = 19/50 (38%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
Frame = +3
Query: 117 RNTAVPMITKDVEKVSTPAPGVGKVL-IREDTVLTVPGCTSCGRGQFTCS 263
R AVP T D K + G+G + I E+TV+TV + G+G+ TC+
Sbjct: 1633 RVRAVP--TGDASKCTVTGAGIGPTIQIGEETVITVD-TKAAGKGKVTCT 1679
>BX664723-1|CAI43198.1| 2607|Homo sapiens filamin A, alpha (actin
binding protein 280) protein.
Length = 2607
Score = 30.3 bits (65), Expect = 6.5
Identities = 19/50 (38%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
Frame = +3
Query: 117 RNTAVPMITKDVEKVSTPAPGVGKVL-IREDTVLTVPGCTSCGRGQFTCS 263
R AVP T D K + G+G + I E+TV+TV + G+G+ TC+
Sbjct: 1633 RVRAVP--TGDASKCTVTGAGIGPTIQIGEETVITVD-TKAAGKGKVTCT 1679
>AK090427-1|BAC03408.1| 2651|Homo sapiens FLJ00343 protein protein.
Length = 2651
Score = 30.3 bits (65), Expect = 6.5
Identities = 19/50 (38%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
Frame = +3
Query: 117 RNTAVPMITKDVEKVSTPAPGVGKVL-IREDTVLTVPGCTSCGRGQFTCS 263
R AVP T D K + G+G + I E+TV+TV + G+G+ TC+
Sbjct: 1645 RVRAVP--TGDASKCTVTGAGIGPTIQIGEETVITVD-TKAAGKGKVTCT 1691
>AK074048-1|BAB84874.1| 1455|Homo sapiens FLJ00119 protein protein.
Length = 1455
Score = 30.3 bits (65), Expect = 6.5
Identities = 19/50 (38%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
Frame = +3
Query: 117 RNTAVPMITKDVEKVSTPAPGVGKVL-IREDTVLTVPGCTSCGRGQFTCS 263
R AVP T D K + G+G + I E+TV+TV + G+G+ TC+
Sbjct: 449 RVRAVP--TGDASKCTVTGAGIGPTIQIGEETVITVD-TKAAGKGKVTCT 495
>AB191259-1|BAD52435.1| 2612|Homo sapiens filamin A protein.
Length = 2612
Score = 30.3 bits (65), Expect = 6.5
Identities = 19/50 (38%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
Frame = +3
Query: 117 RNTAVPMITKDVEKVSTPAPGVGKVL-IREDTVLTVPGCTSCGRGQFTCS 263
R AVP T D K + G+G + I E+TV+TV + G+G+ TC+
Sbjct: 1606 RVRAVP--TGDASKCTVTGAGIGPTIQIGEETVITVD-TKAAGKGKVTCT 1652
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 102,868,349
Number of Sequences: 237096
Number of extensions: 2322311
Number of successful extensions: 6709
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 6460
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6706
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 7591280850
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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